Hb_002566_020

Information

Type -
Description -
Location Contig2566: 28125-28863
Sequence    

Annotation

kegg
ID pop:POPTR_0014s17490g
description POPTRDRAFT_247314; hypothetical protein
nr
ID KDP45220.1
description hypothetical protein JCGZ_15085 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LKM1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15085 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002566_020 0.0 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
2 Hb_009456_010 0.0426164075 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X3 [Populus euphratica]
3 Hb_002783_180 0.0576258671 - - Tubulin beta-6 chain [Gossypium arboreum]
4 Hb_031224_010 0.0799462169 - - -
5 Hb_003633_170 0.0830192555 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000389_100 0.0859537667 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
7 Hb_007370_010 0.0862076709 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
8 Hb_001777_010 0.0938997592 - - -
9 Hb_008304_050 0.0940983212 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
10 Hb_141194_020 0.1105816784 - - carbohydrate transporter, putative [Ricinus communis]
11 Hb_000419_140 0.1140015839 - - Aquaporin PIP2.1, putative [Ricinus communis]
12 Hb_004667_030 0.1140844837 - - hypothetical protein VITISV_034568 [Vitis vinifera]
13 Hb_000186_150 0.1171308436 - - PREDICTED: light-induced protein, chloroplastic-like [Nicotiana sylvestris]
14 Hb_000329_010 0.118682575 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
15 Hb_005332_160 0.1204594081 - - PREDICTED: BAG family molecular chaperone regulator 2-like [Jatropha curcas]
16 Hb_010264_020 0.124098965 - - unnamed protein product [Vitis vinifera]
17 Hb_003124_050 0.1255285068 - - PREDICTED: uncharacterized protein LOC105641435 [Jatropha curcas]
18 Hb_169077_030 0.1271514626 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
19 Hb_000152_880 0.1284421626 - - -
20 Hb_001430_040 0.1286582095 - - gamma-tocopherol methyltransferase [Hevea brasiliensis]

Gene co-expression network

sample Hb_002566_020 Hb_002566_020 Hb_009456_010 Hb_009456_010 Hb_002566_020--Hb_009456_010 Hb_002783_180 Hb_002783_180 Hb_002566_020--Hb_002783_180 Hb_031224_010 Hb_031224_010 Hb_002566_020--Hb_031224_010 Hb_003633_170 Hb_003633_170 Hb_002566_020--Hb_003633_170 Hb_000389_100 Hb_000389_100 Hb_002566_020--Hb_000389_100 Hb_007370_010 Hb_007370_010 Hb_002566_020--Hb_007370_010 Hb_009456_010--Hb_002783_180 Hb_009456_010--Hb_007370_010 Hb_001777_010 Hb_001777_010 Hb_009456_010--Hb_001777_010 Hb_009456_010--Hb_031224_010 Hb_009456_010--Hb_000389_100 Hb_008304_050 Hb_008304_050 Hb_002783_180--Hb_008304_050 Hb_004162_140 Hb_004162_140 Hb_002783_180--Hb_004162_140 Hb_002783_180--Hb_000389_100 Hb_000186_150 Hb_000186_150 Hb_002783_180--Hb_000186_150 Hb_031224_010--Hb_003633_170 Hb_000329_010 Hb_000329_010 Hb_031224_010--Hb_000329_010 Hb_031224_010--Hb_007370_010 Hb_002370_050 Hb_002370_050 Hb_031224_010--Hb_002370_050 Hb_002809_080 Hb_002809_080 Hb_031224_010--Hb_002809_080 Hb_003633_170--Hb_007370_010 Hb_003633_170--Hb_008304_050 Hb_004893_010 Hb_004893_010 Hb_003633_170--Hb_004893_010 Hb_003894_180 Hb_003894_180 Hb_003633_170--Hb_003894_180 Hb_000389_100--Hb_008304_050 Hb_000561_040 Hb_000561_040 Hb_000389_100--Hb_000561_040 Hb_000389_100--Hb_031224_010 Hb_007370_010--Hb_003894_180 Hb_169077_030 Hb_169077_030 Hb_007370_010--Hb_169077_030 Hb_000152_570 Hb_000152_570 Hb_007370_010--Hb_000152_570 Hb_000103_300 Hb_000103_300 Hb_007370_010--Hb_000103_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.144314 0.687482 2.58051 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.988302 1.06003

CAGE analysis