Hb_002571_020

Information

Type -
Description -
Location Contig2571: 25351-27865
Sequence    

Annotation

kegg
ID pop:POPTR_0013s06130g
description POPTRDRAFT_663154; hypothetical protein
nr
ID XP_011034285.1
description PREDICTED: uncharacterized protein LOC105132457 isoform X12 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067KXE7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02668 PE=4 SV=1
Gene Ontology
ID GO:0050789
description maltase- intestinal

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26751: 25404-27916 , PASA_asmbl_26752: 27164-27905
cDNA
(Sanger)
(ID:Location)		 004_A19.ab1: 27164-27905 , 031_C11.ab1: 27164-27905 , 031_H14.ab1: 25465-27916

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002571_020 0.0 - - PREDICTED: uncharacterized protein LOC105132457 isoform X12 [Populus euphratica]
2 Hb_009851_100 0.0573075412 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
3 Hb_000120_750 0.0764142812 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
4 Hb_000484_020 0.0769850292 - - hypothetical protein CISIN_1g030884mg [Citrus sinensis]
5 Hb_001045_080 0.0772551778 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
6 Hb_003376_130 0.0776308795 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
7 Hb_003125_150 0.0781242563 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
8 Hb_000526_150 0.0794606779 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
9 Hb_000212_260 0.0810367736 - - acyl-carrier-protein [Triadica sebifera]
10 Hb_000312_090 0.081549785 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
11 Hb_089140_100 0.0853592195 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
12 Hb_010883_150 0.0888203882 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
13 Hb_010172_030 0.0893611411 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
14 Hb_001912_010 0.0894080974 - - PREDICTED: uncharacterized protein LOC105636600 [Jatropha curcas]
15 Hb_003086_100 0.0913940617 - - hypothetical protein JCGZ_08729 [Jatropha curcas]
16 Hb_001433_050 0.0923631763 - - 60S ribosomal protein L18, putative [Ricinus communis]
17 Hb_002835_320 0.0925142095 - - 60S ribosomal protein L27B [Hevea brasiliensis]
18 Hb_002311_320 0.0926665968 - - PREDICTED: mediator of RNA polymerase II transcription subunit 20a [Jatropha curcas]
19 Hb_001269_270 0.0927805321 - - 60S ribosomal protein L27B [Hevea brasiliensis]
20 Hb_007479_020 0.093684281 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]

Gene co-expression network

sample Hb_002571_020 Hb_002571_020 Hb_009851_100 Hb_009851_100 Hb_002571_020--Hb_009851_100 Hb_000120_750 Hb_000120_750 Hb_002571_020--Hb_000120_750 Hb_000484_020 Hb_000484_020 Hb_002571_020--Hb_000484_020 Hb_001045_080 Hb_001045_080 Hb_002571_020--Hb_001045_080 Hb_003376_130 Hb_003376_130 Hb_002571_020--Hb_003376_130 Hb_003125_150 Hb_003125_150 Hb_002571_020--Hb_003125_150 Hb_000312_090 Hb_000312_090 Hb_009851_100--Hb_000312_090 Hb_009851_100--Hb_001045_080 Hb_002835_320 Hb_002835_320 Hb_009851_100--Hb_002835_320 Hb_000526_150 Hb_000526_150 Hb_009851_100--Hb_000526_150 Hb_001269_270 Hb_001269_270 Hb_009851_100--Hb_001269_270 Hb_004108_230 Hb_004108_230 Hb_000120_750--Hb_004108_230 Hb_004837_140 Hb_004837_140 Hb_000120_750--Hb_004837_140 Hb_007479_020 Hb_007479_020 Hb_000120_750--Hb_007479_020 Hb_001383_060 Hb_001383_060 Hb_000120_750--Hb_001383_060 Hb_000317_340 Hb_000317_340 Hb_000120_750--Hb_000317_340 Hb_004204_120 Hb_004204_120 Hb_000120_750--Hb_004204_120 Hb_012022_120 Hb_012022_120 Hb_000484_020--Hb_012022_120 Hb_000995_040 Hb_000995_040 Hb_000484_020--Hb_000995_040 Hb_000484_020--Hb_000312_090 Hb_000505_140 Hb_000505_140 Hb_000484_020--Hb_000505_140 Hb_003126_090 Hb_003126_090 Hb_000484_020--Hb_003126_090 Hb_001045_080--Hb_003125_150 Hb_001268_140 Hb_001268_140 Hb_001045_080--Hb_001268_140 Hb_001045_080--Hb_000312_090 Hb_001045_080--Hb_001269_270 Hb_000046_260 Hb_000046_260 Hb_001045_080--Hb_000046_260 Hb_000329_330 Hb_000329_330 Hb_003376_130--Hb_000329_330 Hb_000212_260 Hb_000212_260 Hb_003376_130--Hb_000212_260 Hb_148930_010 Hb_148930_010 Hb_003376_130--Hb_148930_010 Hb_003086_100 Hb_003086_100 Hb_003376_130--Hb_003086_100 Hb_148200_010 Hb_148200_010 Hb_003376_130--Hb_148200_010 Hb_003125_150--Hb_001269_270 Hb_003125_150--Hb_000312_090 Hb_003125_150--Hb_009851_100 Hb_003125_150--Hb_007479_020 Hb_003125_150--Hb_000120_750
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.67906 1.79115 2.81726 6.42476 9.34072 8.78903
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.8558 26.2667 10.9959 4.69689 1.75943

CAGE analysis