Hb_002571_050

Information

Type -
Description -
Location Contig2571: 54554-56170
Sequence    

Annotation

kegg
ID pop:POPTR_0019s05670g
description POPTRDRAFT_248798; hypothetical protein
nr
ID XP_012070372.1
description PREDICTED: cation/calcium exchanger 1 [Jatropha curcas]
swissprot
ID Q9SYG9
description Cation/calcium exchanger 4 OS=Arabidopsis thaliana GN=CCX4 PE=2 SV=1
trembl
ID A0A067KXE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02663 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cation calcium exchanger 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002571_050 0.0 - - PREDICTED: cation/calcium exchanger 1 [Jatropha curcas]
2 Hb_002221_020 0.1202284386 - - hypothetical protein B456_008G083700 [Gossypium raimondii]
3 Hb_001899_040 0.1325006818 - - PREDICTED: cyclic nucleotide-gated ion channel 2-like [Jatropha curcas]
4 Hb_000002_280 0.1353658901 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
5 Hb_005081_090 0.1431775601 - - -
6 Hb_000915_220 0.1448380245 - - Lactoylglutathione lyase / glyoxalase I family protein [Theobroma cacao]
7 Hb_000300_240 0.1587393019 - - Sodium/potassium/calcium exchanger 6 precursor, putative [Ricinus communis]
8 Hb_167020_010 0.1629319058 - - unnamed protein product [Vitis vinifera]
9 Hb_000243_310 0.1768514058 - - lactoylglutathione lyase, putative [Ricinus communis]
10 Hb_038190_030 0.1828356274 - - -
11 Hb_007590_040 0.1831209978 - - PREDICTED: vacuolar cation/proton exchanger 3-like [Jatropha curcas]
12 Hb_002025_240 0.1853257779 - - -
13 Hb_000029_180 0.1864531643 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
14 Hb_002218_060 0.1937211181 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006052_050 0.1941434823 - - hypothetical protein EUGRSUZ_A00568 [Eucalyptus grandis]
16 Hb_002284_040 0.2023136057 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
17 Hb_003727_060 0.2024732927 - - nucleic acid binding protein, putative [Ricinus communis]
18 Hb_010091_040 0.2036939578 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
19 Hb_027337_050 0.2071526507 - - polyprotein [Citrus endogenous pararetrovirus]
20 Hb_080873_010 0.2089659851 - - -

Gene co-expression network

sample Hb_002571_050 Hb_002571_050 Hb_002221_020 Hb_002221_020 Hb_002571_050--Hb_002221_020 Hb_001899_040 Hb_001899_040 Hb_002571_050--Hb_001899_040 Hb_000002_280 Hb_000002_280 Hb_002571_050--Hb_000002_280 Hb_005081_090 Hb_005081_090 Hb_002571_050--Hb_005081_090 Hb_000915_220 Hb_000915_220 Hb_002571_050--Hb_000915_220 Hb_000300_240 Hb_000300_240 Hb_002571_050--Hb_000300_240 Hb_007590_040 Hb_007590_040 Hb_002221_020--Hb_007590_040 Hb_002221_020--Hb_000915_220 Hb_000501_180 Hb_000501_180 Hb_002221_020--Hb_000501_180 Hb_002221_020--Hb_005081_090 Hb_000522_020 Hb_000522_020 Hb_002221_020--Hb_000522_020 Hb_027337_050 Hb_027337_050 Hb_001899_040--Hb_027337_050 Hb_009898_060 Hb_009898_060 Hb_001899_040--Hb_009898_060 Hb_001899_040--Hb_000300_240 Hb_038190_030 Hb_038190_030 Hb_001899_040--Hb_038190_030 Hb_001899_040--Hb_000002_280 Hb_000002_280--Hb_000300_240 Hb_002092_140 Hb_002092_140 Hb_000002_280--Hb_002092_140 Hb_166828_010 Hb_166828_010 Hb_000002_280--Hb_166828_010 Hb_080873_010 Hb_080873_010 Hb_000002_280--Hb_080873_010 Hb_010091_040 Hb_010091_040 Hb_000002_280--Hb_010091_040 Hb_005081_090--Hb_038190_030 Hb_167020_010 Hb_167020_010 Hb_005081_090--Hb_167020_010 Hb_005081_090--Hb_001899_040 Hb_007709_020 Hb_007709_020 Hb_005081_090--Hb_007709_020 Hb_000915_220--Hb_007590_040 Hb_067034_010 Hb_067034_010 Hb_000915_220--Hb_067034_010 Hb_001850_010 Hb_001850_010 Hb_000915_220--Hb_001850_010 Hb_006052_050 Hb_006052_050 Hb_000915_220--Hb_006052_050 Hb_000300_240--Hb_166828_010 Hb_000300_240--Hb_002092_140 Hb_000320_170 Hb_000320_170 Hb_000300_240--Hb_000320_170 Hb_002836_030 Hb_002836_030 Hb_000300_240--Hb_002836_030 Hb_003582_050 Hb_003582_050 Hb_000300_240--Hb_003582_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.483964 0.0125998 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0459725 0.17924

CAGE analysis