Hb_002571_090

Information

Type -
Description -
Location Contig2571: 108594-112361
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002571_090 0.0 - - -
2 Hb_000205_340 0.1050662145 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
3 Hb_000296_060 0.1287208308 - - -
4 Hb_000065_050 0.1339993521 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
5 Hb_000574_550 0.1512893896 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a [Jatropha curcas]
6 Hb_187513_010 0.1589706895 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
7 Hb_003551_030 0.1736042842 - - hypothetical protein POPTR_0016s03850g [Populus trichocarpa]
8 Hb_012424_010 0.1835358494 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
9 Hb_001987_010 0.1874628007 - - -
10 Hb_000276_050 0.2041427885 - - -
11 Hb_032531_010 0.2055649286 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_069783_020 0.2135775426 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
13 Hb_000940_190 0.2190124683 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
14 Hb_099723_010 0.2214056568 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
15 Hb_012295_020 0.2231976784 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
16 Hb_012071_010 0.226524634 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
17 Hb_001652_110 0.229013094 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
18 Hb_065943_010 0.2315598729 - - -
19 Hb_006157_050 0.238381281 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_005007_040 0.2407838945 - - hypothetical protein VITISV_032357 [Vitis vinifera]

Gene co-expression network

sample Hb_002571_090 Hb_002571_090 Hb_000205_340 Hb_000205_340 Hb_002571_090--Hb_000205_340 Hb_000296_060 Hb_000296_060 Hb_002571_090--Hb_000296_060 Hb_000065_050 Hb_000065_050 Hb_002571_090--Hb_000065_050 Hb_000574_550 Hb_000574_550 Hb_002571_090--Hb_000574_550 Hb_187513_010 Hb_187513_010 Hb_002571_090--Hb_187513_010 Hb_003551_030 Hb_003551_030 Hb_002571_090--Hb_003551_030 Hb_001987_010 Hb_001987_010 Hb_000205_340--Hb_001987_010 Hb_000205_340--Hb_003551_030 Hb_000205_340--Hb_000296_060 Hb_012424_010 Hb_012424_010 Hb_000205_340--Hb_012424_010 Hb_001693_040 Hb_001693_040 Hb_000205_340--Hb_001693_040 Hb_000296_060--Hb_187513_010 Hb_069783_020 Hb_069783_020 Hb_000296_060--Hb_069783_020 Hb_000296_060--Hb_003551_030 Hb_000296_060--Hb_012424_010 Hb_012071_010 Hb_012071_010 Hb_000065_050--Hb_012071_010 Hb_012295_020 Hb_012295_020 Hb_000065_050--Hb_012295_020 Hb_001652_110 Hb_001652_110 Hb_000065_050--Hb_001652_110 Hb_000065_050--Hb_000574_550 Hb_032531_010 Hb_032531_010 Hb_000065_050--Hb_032531_010 Hb_000574_550--Hb_187513_010 Hb_000574_550--Hb_001652_110 Hb_003226_290 Hb_003226_290 Hb_000574_550--Hb_003226_290 Hb_000574_550--Hb_000296_060 Hb_187513_010--Hb_069783_020 Hb_187513_010--Hb_012424_010 Hb_187513_010--Hb_003551_030 Hb_003551_030--Hb_001987_010 Hb_003551_030--Hb_001693_040 Hb_003551_030--Hb_069783_020 Hb_003551_030--Hb_012424_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.320044 0.0965879 0.118301

CAGE analysis