Hb_002572_060

Information

Type -
Description -
Location Contig2572: 54047-54661
Sequence    

Annotation

kegg
ID rcu:RCOM_1602490
description hypothetical protein
nr
ID XP_002510751.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R8V8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1602490 PE=4 SV=1
Gene Ontology
ID GO:0005634
description poly polymerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26771: 54483-54656
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002572_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000959_290 0.070922714 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]
3 Hb_000610_030 0.0711297653 - - hypothetical protein MIMGU_mgv1a0038491mg, partial [Erythranthe guttata]
4 Hb_013726_100 0.0737064948 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
5 Hb_011671_290 0.079862713 transcription factor TF Family: ERF hypothetical protein JCGZ_26299 [Jatropha curcas]
6 Hb_093204_010 0.0801095821 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004994_070 0.0853087602 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
8 Hb_000256_050 0.0870541957 - - chitinase, putative [Ricinus communis]
9 Hb_006519_010 0.0882957854 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 [Vitis vinifera]
10 Hb_002475_110 0.0883636524 - - E3 ubiquitin ligase PUB14, putative [Ricinus communis]
11 Hb_004767_040 0.0914933592 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
12 Hb_001623_020 0.0937763135 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
13 Hb_011111_010 0.1000464318 - - PREDICTED: putative RING-H2 finger protein ATL21A [Jatropha curcas]
14 Hb_001190_020 0.1088958854 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_143232_020 0.1094659417 - - hypothetical protein JCGZ_20467 [Jatropha curcas]
16 Hb_027214_060 0.113512454 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
17 Hb_008931_020 0.1200156918 - - Receptor like protein 46, putative [Theobroma cacao]
18 Hb_011805_060 0.1259748423 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
19 Hb_000227_410 0.1270872848 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]
20 Hb_025477_030 0.1275586651 transcription factor TF Family: ERF dehydration-responsive element-binding protein 2 [Manihot esculenta]

Gene co-expression network

sample Hb_002572_060 Hb_002572_060 Hb_000959_290 Hb_000959_290 Hb_002572_060--Hb_000959_290 Hb_000610_030 Hb_000610_030 Hb_002572_060--Hb_000610_030 Hb_013726_100 Hb_013726_100 Hb_002572_060--Hb_013726_100 Hb_011671_290 Hb_011671_290 Hb_002572_060--Hb_011671_290 Hb_093204_010 Hb_093204_010 Hb_002572_060--Hb_093204_010 Hb_004994_070 Hb_004994_070 Hb_002572_060--Hb_004994_070 Hb_006519_010 Hb_006519_010 Hb_000959_290--Hb_006519_010 Hb_000959_290--Hb_004994_070 Hb_001190_020 Hb_001190_020 Hb_000959_290--Hb_001190_020 Hb_000959_290--Hb_093204_010 Hb_000333_150 Hb_000333_150 Hb_000959_290--Hb_000333_150 Hb_000610_030--Hb_011671_290 Hb_000610_030--Hb_013726_100 Hb_000256_050 Hb_000256_050 Hb_000610_030--Hb_000256_050 Hb_002475_110 Hb_002475_110 Hb_000610_030--Hb_002475_110 Hb_001623_020 Hb_001623_020 Hb_000610_030--Hb_001623_020 Hb_013726_100--Hb_002475_110 Hb_013726_100--Hb_000256_050 Hb_013726_100--Hb_001623_020 Hb_025477_030 Hb_025477_030 Hb_013726_100--Hb_025477_030 Hb_009683_060 Hb_009683_060 Hb_013726_100--Hb_009683_060 Hb_008931_020 Hb_008931_020 Hb_011671_290--Hb_008931_020 Hb_011671_290--Hb_000959_290 Hb_000414_100 Hb_000414_100 Hb_011671_290--Hb_000414_100 Hb_011671_290--Hb_004994_070 Hb_011111_010 Hb_011111_010 Hb_093204_010--Hb_011111_010 Hb_093204_010--Hb_004994_070 Hb_093204_010--Hb_006519_010 Hb_004767_040 Hb_004767_040 Hb_093204_010--Hb_004767_040 Hb_004994_070--Hb_006519_010 Hb_004994_070--Hb_000333_150 Hb_004994_070--Hb_011111_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.083942 730.779 21.4307 79.813 0.0422288 0.112105
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.778833 0.612126 0.268606 1.50402 4.01359

CAGE analysis