Hb_002576_010

Information

Type -
Description -
Location Contig2576: 35286-36128
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002576_010 0.0 - - -
2 Hb_047923_030 0.0212049683 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
3 Hb_134377_070 0.0620311321 - - -
4 Hb_000142_090 0.0709170847 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
5 Hb_181013_010 0.0760190872 - - PREDICTED: uncharacterized protein LOC105629028 [Jatropha curcas]
6 Hb_005432_020 0.0823414038 - - -
7 Hb_159124_010 0.0839705654 - - PREDICTED: uncharacterized protein LOC103332224 [Prunus mume]
8 Hb_101034_010 0.0882974793 - - -
9 Hb_006120_160 0.0952773513 - - -
10 Hb_099878_040 0.1008670658 - - PREDICTED: uncharacterized protein LOC102703670 [Oryza brachyantha]
11 Hb_000975_060 0.1059006381 - - -
12 Hb_004445_030 0.1105353468 - - conserved hypothetical protein [Ricinus communis]
13 Hb_056506_080 0.1117559872 - - PREDICTED: uncharacterized protein LOC104888944 [Beta vulgaris subsp. vulgaris]
14 Hb_054127_020 0.1203030062 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
15 Hb_000248_020 0.1283138774 - - PREDICTED: uncharacterized protein LOC104243878 [Nicotiana sylvestris]
16 Hb_094694_010 0.1380130239 - - -
17 Hb_139605_010 0.1517122565 - - polyprotein [Citrus endogenous pararetrovirus]
18 Hb_179183_010 0.1531058 - - RALF-LIKE 32 family protein [Populus trichocarpa]
19 Hb_001174_050 0.1540518642 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_000405_010 0.1568136531 - - hypothetical protein JCGZ_15779 [Jatropha curcas]

Gene co-expression network

sample Hb_002576_010 Hb_002576_010 Hb_047923_030 Hb_047923_030 Hb_002576_010--Hb_047923_030 Hb_134377_070 Hb_134377_070 Hb_002576_010--Hb_134377_070 Hb_000142_090 Hb_000142_090 Hb_002576_010--Hb_000142_090 Hb_181013_010 Hb_181013_010 Hb_002576_010--Hb_181013_010 Hb_005432_020 Hb_005432_020 Hb_002576_010--Hb_005432_020 Hb_159124_010 Hb_159124_010 Hb_002576_010--Hb_159124_010 Hb_047923_030--Hb_134377_070 Hb_047923_030--Hb_000142_090 Hb_047923_030--Hb_181013_010 Hb_047923_030--Hb_159124_010 Hb_047923_030--Hb_005432_020 Hb_134377_070--Hb_000142_090 Hb_134377_070--Hb_181013_010 Hb_134377_070--Hb_005432_020 Hb_101034_010 Hb_101034_010 Hb_134377_070--Hb_101034_010 Hb_134377_070--Hb_159124_010 Hb_006120_160 Hb_006120_160 Hb_134377_070--Hb_006120_160 Hb_000142_090--Hb_181013_010 Hb_000142_090--Hb_005432_020 Hb_000142_090--Hb_101034_010 Hb_000142_090--Hb_006120_160 Hb_000142_090--Hb_159124_010 Hb_181013_010--Hb_005432_020 Hb_181013_010--Hb_101034_010 Hb_181013_010--Hb_006120_160 Hb_181013_010--Hb_159124_010 Hb_005432_020--Hb_101034_010 Hb_005432_020--Hb_006120_160 Hb_005432_020--Hb_159124_010 Hb_159124_010--Hb_101034_010 Hb_159124_010--Hb_006120_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0565277 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0495246 0.362929

CAGE analysis