Hb_002577_010

Information

Type -
Description -
Location Contig2577: 114929-118344
Sequence    

Annotation

kegg
ID rcu:RCOM_1584490
description Receptor protein kinase CLAVATA1 precursor, putative (EC:2.7.10.1 1.3.1.74)
nr
ID XP_012068112.1
description PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
swissprot
ID Q9LJM4
description Receptor-like protein kinase HAIKU2 OS=Arabidopsis thaliana GN=IKU2 PE=1 SV=1
trembl
ID A0A067KZD3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15949 PE=3 SV=1
Gene Ontology
ID GO:0004672
description receptor-like protein kinase haiku2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26773: 115909-116688
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002577_010 0.0 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
2 Hb_074783_010 0.1138163616 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
3 Hb_004328_040 0.1178036344 - - PREDICTED: wall-associated receptor kinase-like 8 [Vitis vinifera]
4 Hb_003647_060 0.1240210645 - - PREDICTED: uncharacterized protein LOC105646679 isoform X2 [Jatropha curcas]
5 Hb_000007_140 0.132020542 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570 [Jatropha curcas]
6 Hb_004200_020 0.1378902187 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
7 Hb_165669_010 0.1397394446 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X1 [Jatropha curcas]
8 Hb_003994_060 0.1432356287 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
9 Hb_000392_310 0.143729989 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000011_400 0.1437732359 transcription factor TF Family: ERF ethylene-responsive transcription factor 4 [Hevea brasiliensis]
11 Hb_000318_330 0.1468402583 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Jatropha curcas]
12 Hb_001049_020 0.1478017957 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002835_180 0.1478407136 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_003442_070 0.1498100522 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
15 Hb_009510_040 0.1500745414 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
16 Hb_001123_320 0.1502310373 - - PREDICTED: uncharacterized protein LOC105647314 isoform X3 [Jatropha curcas]
17 Hb_003972_080 0.1505599125 - - PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]
18 Hb_001663_050 0.1514209152 - - PREDICTED: GPN-loop GTPase 3 [Jatropha curcas]
19 Hb_034406_030 0.1521249734 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Musa acuminata subsp. malaccensis]
20 Hb_004993_060 0.1529004564 - - -

Gene co-expression network

sample Hb_002577_010 Hb_002577_010 Hb_074783_010 Hb_074783_010 Hb_002577_010--Hb_074783_010 Hb_004328_040 Hb_004328_040 Hb_002577_010--Hb_004328_040 Hb_003647_060 Hb_003647_060 Hb_002577_010--Hb_003647_060 Hb_000007_140 Hb_000007_140 Hb_002577_010--Hb_000007_140 Hb_004200_020 Hb_004200_020 Hb_002577_010--Hb_004200_020 Hb_165669_010 Hb_165669_010 Hb_002577_010--Hb_165669_010 Hb_074783_010--Hb_003647_060 Hb_001021_130 Hb_001021_130 Hb_074783_010--Hb_001021_130 Hb_000592_020 Hb_000592_020 Hb_074783_010--Hb_000592_020 Hb_001053_090 Hb_001053_090 Hb_074783_010--Hb_001053_090 Hb_034688_020 Hb_034688_020 Hb_074783_010--Hb_034688_020 Hb_001004_110 Hb_001004_110 Hb_004328_040--Hb_001004_110 Hb_000011_400 Hb_000011_400 Hb_004328_040--Hb_000011_400 Hb_000318_330 Hb_000318_330 Hb_004328_040--Hb_000318_330 Hb_001123_320 Hb_001123_320 Hb_004328_040--Hb_001123_320 Hb_000676_190 Hb_000676_190 Hb_004328_040--Hb_000676_190 Hb_007508_090 Hb_007508_090 Hb_003647_060--Hb_007508_090 Hb_003647_060--Hb_001021_130 Hb_000646_050 Hb_000646_050 Hb_003647_060--Hb_000646_050 Hb_005396_150 Hb_005396_150 Hb_003647_060--Hb_005396_150 Hb_000710_060 Hb_000710_060 Hb_003647_060--Hb_000710_060 Hb_000392_310 Hb_000392_310 Hb_000007_140--Hb_000392_310 Hb_001504_330 Hb_001504_330 Hb_000007_140--Hb_001504_330 Hb_013399_050 Hb_013399_050 Hb_000007_140--Hb_013399_050 Hb_000603_080 Hb_000603_080 Hb_000007_140--Hb_000603_080 Hb_009803_050 Hb_009803_050 Hb_000007_140--Hb_009803_050 Hb_005356_040 Hb_005356_040 Hb_000007_140--Hb_005356_040 Hb_022250_090 Hb_022250_090 Hb_004200_020--Hb_022250_090 Hb_000213_100 Hb_000213_100 Hb_004200_020--Hb_000213_100 Hb_002918_180 Hb_002918_180 Hb_004200_020--Hb_002918_180 Hb_002218_010 Hb_002218_010 Hb_004200_020--Hb_002218_010 Hb_000680_050 Hb_000680_050 Hb_004200_020--Hb_000680_050 Hb_009510_040 Hb_009510_040 Hb_165669_010--Hb_009510_040 Hb_000329_250 Hb_000329_250 Hb_165669_010--Hb_000329_250 Hb_000496_120 Hb_000496_120 Hb_165669_010--Hb_000496_120 Hb_000215_060 Hb_000215_060 Hb_165669_010--Hb_000215_060 Hb_008173_110 Hb_008173_110 Hb_165669_010--Hb_008173_110 Hb_008771_030 Hb_008771_030 Hb_165669_010--Hb_008771_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.6694 23.5756 6.30102 17.378 6.89992 5.51824
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.26 29.8081 36.7407 28.2122 7.37825

CAGE analysis