Hb_002585_020

Information

Type -
Description -
Location Contig2585: 11468-14288
Sequence    

Annotation

kegg
ID cic:CICLE_v10018197mg
description hypothetical protein
nr
ID XP_011036383.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g18485-like [Populus euphratica]
swissprot
ID Q9SN39
description Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana GN=DOT4 PE=2 SV=1
trembl
ID V4W153
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018197mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002585_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18485-like [Populus euphratica]
2 Hb_000120_460 0.0883454918 - - PREDICTED: thioredoxin reductase NTRB-like [Jatropha curcas]
3 Hb_002435_120 0.0886321025 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_004846_070 0.0927951787 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Populus euphratica]
5 Hb_000041_100 0.0960473715 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
6 Hb_006824_050 0.0980442885 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Jatropha curcas]
7 Hb_002307_170 0.1016134226 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
8 Hb_001085_060 0.1020484605 - - PREDICTED: pentatricopeptide repeat-containing protein At1g04840 [Jatropha curcas]
9 Hb_001959_190 0.1034854906 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
10 Hb_000367_060 0.1041818896 - - diacylglycerol kinase, theta, putative [Ricinus communis]
11 Hb_003688_150 0.1055759845 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
12 Hb_007881_030 0.1065545963 - - Protein YME1, putative [Ricinus communis]
13 Hb_000614_250 0.1068088218 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
14 Hb_011534_030 0.1073278062 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
15 Hb_003847_030 0.1078458971 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]
16 Hb_032225_010 0.1079010638 - - protein phosphatase 2c, putative [Ricinus communis]
17 Hb_002620_020 0.1081330319 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
18 Hb_001633_210 0.1084451791 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
19 Hb_002878_020 0.1099793457 - - mitochondrial carrier protein, putative [Ricinus communis]
20 Hb_003777_320 0.1103490245 - - PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_002585_020 Hb_002585_020 Hb_000120_460 Hb_000120_460 Hb_002585_020--Hb_000120_460 Hb_002435_120 Hb_002435_120 Hb_002585_020--Hb_002435_120 Hb_004846_070 Hb_004846_070 Hb_002585_020--Hb_004846_070 Hb_000041_100 Hb_000041_100 Hb_002585_020--Hb_000041_100 Hb_006824_050 Hb_006824_050 Hb_002585_020--Hb_006824_050 Hb_002307_170 Hb_002307_170 Hb_002585_020--Hb_002307_170 Hb_000976_170 Hb_000976_170 Hb_000120_460--Hb_000976_170 Hb_025240_040 Hb_025240_040 Hb_000120_460--Hb_025240_040 Hb_004218_110 Hb_004218_110 Hb_000120_460--Hb_004218_110 Hb_003697_040 Hb_003697_040 Hb_000120_460--Hb_003697_040 Hb_108350_010 Hb_108350_010 Hb_000120_460--Hb_108350_010 Hb_001545_170 Hb_001545_170 Hb_000120_460--Hb_001545_170 Hb_000185_040 Hb_000185_040 Hb_002435_120--Hb_000185_040 Hb_000107_330 Hb_000107_330 Hb_002435_120--Hb_000107_330 Hb_001377_490 Hb_001377_490 Hb_002435_120--Hb_001377_490 Hb_000086_400 Hb_000086_400 Hb_002435_120--Hb_000086_400 Hb_001085_060 Hb_001085_060 Hb_002435_120--Hb_001085_060 Hb_002435_120--Hb_000120_460 Hb_000206_240 Hb_000206_240 Hb_004846_070--Hb_000206_240 Hb_001090_050 Hb_001090_050 Hb_004846_070--Hb_001090_050 Hb_013607_040 Hb_013607_040 Hb_004846_070--Hb_013607_040 Hb_000002_050 Hb_000002_050 Hb_004846_070--Hb_000002_050 Hb_004846_070--Hb_002307_170 Hb_008695_100 Hb_008695_100 Hb_004846_070--Hb_008695_100 Hb_003371_090 Hb_003371_090 Hb_000041_100--Hb_003371_090 Hb_002450_020 Hb_002450_020 Hb_000041_100--Hb_002450_020 Hb_000297_010 Hb_000297_010 Hb_000041_100--Hb_000297_010 Hb_007441_220 Hb_007441_220 Hb_000041_100--Hb_007441_220 Hb_000230_500 Hb_000230_500 Hb_000041_100--Hb_000230_500 Hb_011386_010 Hb_011386_010 Hb_000041_100--Hb_011386_010 Hb_000318_330 Hb_000318_330 Hb_006824_050--Hb_000318_330 Hb_001959_190 Hb_001959_190 Hb_006824_050--Hb_001959_190 Hb_000367_260 Hb_000367_260 Hb_006824_050--Hb_000367_260 Hb_002878_020 Hb_002878_020 Hb_006824_050--Hb_002878_020 Hb_009803_050 Hb_009803_050 Hb_006824_050--Hb_009803_050 Hb_002307_170--Hb_013607_040 Hb_011534_030 Hb_011534_030 Hb_002307_170--Hb_011534_030 Hb_000479_140 Hb_000479_140 Hb_002307_170--Hb_000479_140 Hb_001014_230 Hb_001014_230 Hb_002307_170--Hb_001014_230 Hb_000471_110 Hb_000471_110 Hb_002307_170--Hb_000471_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.352217 0.636606 0.233784 0.505032 0.423115 0.944248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.571536 1.18683 1.26472 0.72877 0.691904

CAGE analysis