Hb_002585_050

Information

Type -
Description -
Location Contig2585: 55445-56126
Sequence    

Annotation

kegg
ID rcu:RCOM_0119190
description hypothetical protein
nr
ID XP_002531024.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SYF5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0119190 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26880: 55552-56193
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002585_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007816_010 0.0077373317 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
3 Hb_000592_150 0.0090296653 - - Os05g0413200 [Oryza sativa Japonica Group]
4 Hb_004228_050 0.0099637625 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
5 Hb_002837_010 0.0126600583 - - hypothetical protein POPTR_0497s00200g [Populus trichocarpa]
6 Hb_002305_040 0.0155663296 - - TMV resistance protein N, putative [Ricinus communis]
7 Hb_075653_010 0.0165406069 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
8 Hb_011846_020 0.0182685498 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
9 Hb_002186_150 0.0200745561 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
10 Hb_046150_010 0.0201080575 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 6-like isoform X1 [Citrus sinensis]
11 Hb_000265_040 0.0205513193 - - PREDICTED: subtilisin-like protease, partial [Prunus mume]
12 Hb_001536_070 0.0206665519 - - hypothetical protein JCGZ_20053 [Jatropha curcas]
13 Hb_107495_020 0.0214092476 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
14 Hb_004744_030 0.0229772293 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
15 Hb_000500_380 0.023646741 - - PREDICTED: GDSL esterase/lipase At5g45670-like [Jatropha curcas]
16 Hb_006953_010 0.024212561 - - cytochrome P450, putative [Ricinus communis]
17 Hb_000227_010 0.0258495411 - - hypothetical protein JCGZ_02114 [Jatropha curcas]
18 Hb_002049_040 0.0262934273 - - PREDICTED: protein UNUSUAL FLORAL ORGANS [Jatropha curcas]
19 Hb_182291_010 0.027364725 - - hypothetical protein CICLE_v10029654mg [Citrus clementina]
20 Hb_004598_010 0.0285871865 - - PREDICTED: 11-beta-hydroxysteroid dehydrogenase-like 5 [Jatropha curcas]

Gene co-expression network

sample Hb_002585_050 Hb_002585_050 Hb_007816_010 Hb_007816_010 Hb_002585_050--Hb_007816_010 Hb_000592_150 Hb_000592_150 Hb_002585_050--Hb_000592_150 Hb_004228_050 Hb_004228_050 Hb_002585_050--Hb_004228_050 Hb_002837_010 Hb_002837_010 Hb_002585_050--Hb_002837_010 Hb_002305_040 Hb_002305_040 Hb_002585_050--Hb_002305_040 Hb_075653_010 Hb_075653_010 Hb_002585_050--Hb_075653_010 Hb_007816_010--Hb_002837_010 Hb_011846_020 Hb_011846_020 Hb_007816_010--Hb_011846_020 Hb_002186_150 Hb_002186_150 Hb_007816_010--Hb_002186_150 Hb_046150_010 Hb_046150_010 Hb_007816_010--Hb_046150_010 Hb_004744_030 Hb_004744_030 Hb_007816_010--Hb_004744_030 Hb_000592_150--Hb_004228_050 Hb_000592_150--Hb_002305_040 Hb_000592_150--Hb_075653_010 Hb_000265_040 Hb_000265_040 Hb_000592_150--Hb_000265_040 Hb_001536_070 Hb_001536_070 Hb_000592_150--Hb_001536_070 Hb_004228_050--Hb_002305_040 Hb_004228_050--Hb_075653_010 Hb_004228_050--Hb_000265_040 Hb_004228_050--Hb_001536_070 Hb_002837_010--Hb_011846_020 Hb_002837_010--Hb_002186_150 Hb_002837_010--Hb_046150_010 Hb_002837_010--Hb_004744_030 Hb_000500_380 Hb_000500_380 Hb_002837_010--Hb_000500_380 Hb_002305_040--Hb_075653_010 Hb_002305_040--Hb_000265_040 Hb_002305_040--Hb_001536_070 Hb_107495_020 Hb_107495_020 Hb_002305_040--Hb_107495_020 Hb_075653_010--Hb_000265_040 Hb_075653_010--Hb_001536_070 Hb_075653_010--Hb_107495_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.67294 0.333753 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis