Hb_002587_020

Information

Type -
Description -
Location Contig2587: 6865-13038
Sequence    

Annotation

kegg
ID rcu:RCOM_0815430
description nucleic acid binding protein, putative
nr
ID XP_002518281.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RX12
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0815430 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26881: 6811-13153 , PASA_asmbl_26882: 9287-9881
cDNA
(Sanger)
(ID:Location)		 017_G06.ab1: 6827-7313 , 033_F21.ab1: 6811-8537 , 037_N20.ab1: 6811-8696 , 053_H22.ab1: 6811-8591

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002587_020 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
2 Hb_001584_290 0.0694506084 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
3 Hb_008143_030 0.076433195 - - PREDICTED: uncharacterized protein LOC105650295 isoform X2 [Jatropha curcas]
4 Hb_002652_040 0.0826735193 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
5 Hb_030827_030 0.0828833027 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
6 Hb_008595_010 0.0848158502 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial [Jatropha curcas]
7 Hb_007407_040 0.0854585641 - - ankyrin repeat-containing protein, putative [Ricinus communis]
8 Hb_004656_060 0.0869885118 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
9 Hb_001504_160 0.0880249472 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
10 Hb_004195_280 0.0886263957 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
11 Hb_023001_020 0.0887955274 - - PREDICTED: mitochondrial succinate-fumarate transporter 1 [Jatropha curcas]
12 Hb_000424_010 0.0899419044 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
13 Hb_004701_030 0.0903150647 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
14 Hb_000923_040 0.0906476986 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
15 Hb_000139_250 0.0917701556 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
16 Hb_009265_080 0.0930336517 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
17 Hb_000059_150 0.0941604805 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]
18 Hb_010222_080 0.0946166186 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
19 Hb_000618_030 0.0946220784 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like isoform X4 [Populus euphratica]
20 Hb_000048_140 0.095066416 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_002587_020 Hb_002587_020 Hb_001584_290 Hb_001584_290 Hb_002587_020--Hb_001584_290 Hb_008143_030 Hb_008143_030 Hb_002587_020--Hb_008143_030 Hb_002652_040 Hb_002652_040 Hb_002587_020--Hb_002652_040 Hb_030827_030 Hb_030827_030 Hb_002587_020--Hb_030827_030 Hb_008595_010 Hb_008595_010 Hb_002587_020--Hb_008595_010 Hb_007407_040 Hb_007407_040 Hb_002587_020--Hb_007407_040 Hb_001584_290--Hb_008143_030 Hb_010222_080 Hb_010222_080 Hb_001584_290--Hb_010222_080 Hb_000104_080 Hb_000104_080 Hb_001584_290--Hb_000104_080 Hb_000923_040 Hb_000923_040 Hb_001584_290--Hb_000923_040 Hb_000640_220 Hb_000640_220 Hb_001584_290--Hb_000640_220 Hb_108216_040 Hb_108216_040 Hb_008143_030--Hb_108216_040 Hb_000035_040 Hb_000035_040 Hb_008143_030--Hb_000035_040 Hb_000640_320 Hb_000640_320 Hb_008143_030--Hb_000640_320 Hb_008143_030--Hb_000104_080 Hb_008143_030--Hb_002652_040 Hb_002652_040--Hb_000035_040 Hb_000331_190 Hb_000331_190 Hb_002652_040--Hb_000331_190 Hb_000424_010 Hb_000424_010 Hb_002652_040--Hb_000424_010 Hb_125092_020 Hb_125092_020 Hb_002652_040--Hb_125092_020 Hb_002883_010 Hb_002883_010 Hb_002652_040--Hb_002883_010 Hb_175338_020 Hb_175338_020 Hb_002652_040--Hb_175338_020 Hb_003126_100 Hb_003126_100 Hb_030827_030--Hb_003126_100 Hb_001040_040 Hb_001040_040 Hb_030827_030--Hb_001040_040 Hb_030827_030--Hb_000923_040 Hb_000345_530 Hb_000345_530 Hb_030827_030--Hb_000345_530 Hb_030827_030--Hb_000104_080 Hb_001300_070 Hb_001300_070 Hb_008595_010--Hb_001300_070 Hb_000768_190 Hb_000768_190 Hb_008595_010--Hb_000768_190 Hb_000059_150 Hb_000059_150 Hb_008595_010--Hb_000059_150 Hb_010381_060 Hb_010381_060 Hb_008595_010--Hb_010381_060 Hb_000037_110 Hb_000037_110 Hb_008595_010--Hb_000037_110 Hb_000048_140 Hb_000048_140 Hb_007407_040--Hb_000048_140 Hb_001366_040 Hb_001366_040 Hb_007407_040--Hb_001366_040 Hb_004195_280 Hb_004195_280 Hb_007407_040--Hb_004195_280 Hb_000179_020 Hb_000179_020 Hb_007407_040--Hb_000179_020 Hb_001504_160 Hb_001504_160 Hb_007407_040--Hb_001504_160 Hb_003362_040 Hb_003362_040 Hb_007407_040--Hb_003362_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.3311 5.67194 7.45763 4.19376 21.8048 19.2739
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.00638 6.05941 9.30171 6.47613 5.21264

CAGE analysis