Hb_002588_020

Information

Type -
Description -
Location Contig2588: 29324-32986
Sequence    

Annotation

kegg
ID tcc:TCM_018339
description hypothetical protein
nr
ID ABA91128.1
description retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
swissprot
ID -
description -
trembl
ID Q2RBH8
description Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os11g01970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002588_020 0.0 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
2 Hb_003581_160 0.163477609 - - -
3 Hb_137914_010 0.2555276141 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
4 Hb_001491_060 0.2757445194 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like isoform X1 [Populus euphratica]
5 Hb_000046_230 0.2807922065 - - PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
6 Hb_011344_100 0.2822572631 - - -
7 Hb_001269_280 0.2921547252 - - -
8 Hb_000465_360 0.3185550815 - - hypothetical protein CISIN_1g024854mg [Citrus sinensis]
9 Hb_011468_010 0.3189527168 - - hypothetical protein B456_008G198600 [Gossypium raimondii]
10 Hb_017524_010 0.3192518313 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
11 Hb_001749_030 0.3194834588 - - -
12 Hb_022425_010 0.3265712244 - - Xyloglucan endotransglucosylase/hydrolase protein 14 precursor, putative [Ricinus communis]
13 Hb_005654_020 0.331018586 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_000017_150 0.3380786708 - - hypothetical protein POPTR_0001s09780g [Populus trichocarpa]
15 Hb_000740_030 0.3403216632 - - hypothetical protein VITISV_038271 [Vitis vinifera]
16 Hb_170516_010 0.3439621311 - - hypothetical protein MTR_001s0023 [Medicago truncatula]
17 Hb_003117_050 0.3450704312 - - -
18 Hb_004266_010 0.3528821557 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
19 Hb_001999_190 0.3551430053 - - GDP-mannose transporter, putative [Ricinus communis]
20 Hb_001907_130 0.3557472322 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002588_020 Hb_002588_020 Hb_003581_160 Hb_003581_160 Hb_002588_020--Hb_003581_160 Hb_137914_010 Hb_137914_010 Hb_002588_020--Hb_137914_010 Hb_001491_060 Hb_001491_060 Hb_002588_020--Hb_001491_060 Hb_000046_230 Hb_000046_230 Hb_002588_020--Hb_000046_230 Hb_011344_100 Hb_011344_100 Hb_002588_020--Hb_011344_100 Hb_001269_280 Hb_001269_280 Hb_002588_020--Hb_001269_280 Hb_005654_020 Hb_005654_020 Hb_003581_160--Hb_005654_020 Hb_011468_010 Hb_011468_010 Hb_003581_160--Hb_011468_010 Hb_003581_160--Hb_000046_230 Hb_003581_160--Hb_001491_060 Hb_003581_160--Hb_137914_010 Hb_000017_150 Hb_000017_150 Hb_137914_010--Hb_000017_150 Hb_137914_010--Hb_001491_060 Hb_010398_010 Hb_010398_010 Hb_137914_010--Hb_010398_010 Hb_001477_040 Hb_001477_040 Hb_137914_010--Hb_001477_040 Hb_001608_020 Hb_001608_020 Hb_137914_010--Hb_001608_020 Hb_001999_190 Hb_001999_190 Hb_001491_060--Hb_001999_190 Hb_002542_120 Hb_002542_120 Hb_001491_060--Hb_002542_120 Hb_001148_020 Hb_001148_020 Hb_001491_060--Hb_001148_020 Hb_038190_040 Hb_038190_040 Hb_000046_230--Hb_038190_040 Hb_000740_030 Hb_000740_030 Hb_000046_230--Hb_000740_030 Hb_004604_020 Hb_004604_020 Hb_000046_230--Hb_004604_020 Hb_000046_230--Hb_011468_010 Hb_001907_130 Hb_001907_130 Hb_011344_100--Hb_001907_130 Hb_170516_010 Hb_170516_010 Hb_011344_100--Hb_170516_010 Hb_115116_010 Hb_115116_010 Hb_011344_100--Hb_115116_010 Hb_065452_010 Hb_065452_010 Hb_011344_100--Hb_065452_010 Hb_033594_090 Hb_033594_090 Hb_011344_100--Hb_033594_090 Hb_005464_010 Hb_005464_010 Hb_011344_100--Hb_005464_010 Hb_001269_280--Hb_005464_010 Hb_000465_360 Hb_000465_360 Hb_001269_280--Hb_000465_360 Hb_002368_080 Hb_002368_080 Hb_001269_280--Hb_002368_080 Hb_022425_010 Hb_022425_010 Hb_001269_280--Hb_022425_010 Hb_001369_530 Hb_001369_530 Hb_001269_280--Hb_001369_530 Hb_001269_280--Hb_011344_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0203074 0 0.0192797 0.0344929 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0175314 0

CAGE analysis