Hb_002595_100

Information

Type -
Description -
Location Contig2595: 34657-35094
Sequence    

Annotation

kegg
ID rcu:RCOM_0731690
description heat-shock protein, putative
nr
ID XP_002520464.1
description heat-shock protein, putative [Ricinus communis]
swissprot
ID P05478
description 18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1
trembl
ID B9S395
description Heat-shock protein, putative OS=Ricinus communis GN=RCOM_0731690 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002595_100 0.0 - - heat-shock protein, putative [Ricinus communis]
2 Hb_002900_060 0.0791298457 - - CI small heat shock protein 2 [Prunus salicina]
3 Hb_002260_190 0.0914148366 - - -
4 Hb_002022_050 0.0991691539 - - PREDICTED: O-acyltransferase WSD1-like isoform X1 [Populus euphratica]
5 Hb_002073_070 0.1012559596 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
6 Hb_000005_040 0.1074395228 - - PREDICTED: histone H2B.2 [Jatropha curcas]
7 Hb_005730_080 0.1763853838 - - PREDICTED: 17.6 kDa class I heat shock protein-like [Solanum lycopersicum]
8 Hb_000005_120 0.1820015997 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
9 Hb_000011_130 0.1820015997 - - lipase [Ricinus communis]
10 Hb_000046_140 0.1820015997 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000081_070 0.1820015997 - - -
12 Hb_000171_010 0.1820015997 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
13 Hb_000189_040 0.1820015997 - - hypothetical protein [Trichoderma aureoviride]
14 Hb_000210_170 0.1820015997 - - -
15 Hb_000252_010 0.1820015997 - - -
16 Hb_000288_040 0.1820015997 - - -
17 Hb_000300_490 0.1820015997 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000317_500 0.1820015997 - - -
19 Hb_000329_680 0.1820015997 - - hypothetical protein JCGZ_14616 [Jatropha curcas]
20 Hb_000401_060 0.1820015997 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]

Gene co-expression network

sample Hb_002595_100 Hb_002595_100 Hb_002900_060 Hb_002900_060 Hb_002595_100--Hb_002900_060 Hb_002260_190 Hb_002260_190 Hb_002595_100--Hb_002260_190 Hb_002022_050 Hb_002022_050 Hb_002595_100--Hb_002022_050 Hb_002073_070 Hb_002073_070 Hb_002595_100--Hb_002073_070 Hb_000005_040 Hb_000005_040 Hb_002595_100--Hb_000005_040 Hb_005730_080 Hb_005730_080 Hb_002595_100--Hb_005730_080 Hb_002900_060--Hb_000005_040 Hb_002900_060--Hb_002260_190 Hb_002900_060--Hb_002022_050 Hb_002900_060--Hb_002073_070 Hb_002232_200 Hb_002232_200 Hb_002900_060--Hb_002232_200 Hb_002260_190--Hb_002022_050 Hb_002260_190--Hb_000005_040 Hb_001142_020 Hb_001142_020 Hb_002260_190--Hb_001142_020 Hb_155911_010 Hb_155911_010 Hb_002260_190--Hb_155911_010 Hb_002022_050--Hb_000005_040 Hb_002022_050--Hb_001142_020 Hb_002022_050--Hb_155911_010 Hb_000005_120 Hb_000005_120 Hb_002073_070--Hb_000005_120 Hb_000011_130 Hb_000011_130 Hb_002073_070--Hb_000011_130 Hb_000046_140 Hb_000046_140 Hb_002073_070--Hb_000046_140 Hb_000081_070 Hb_000081_070 Hb_002073_070--Hb_000081_070 Hb_000171_010 Hb_000171_010 Hb_002073_070--Hb_000171_010 Hb_000189_040 Hb_000189_040 Hb_002073_070--Hb_000189_040 Hb_000005_040--Hb_002232_200 Hb_000005_040--Hb_001142_020 Hb_005730_080--Hb_000005_040 Hb_005730_080--Hb_002232_200 Hb_005730_080--Hb_002900_060 Hb_005730_080--Hb_002260_190 Hb_005730_080--Hb_002022_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 1.18252 0.0817869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis