Hb_002596_030

Information

Type -
Description -
Location Contig2596: 27235-30991
Sequence    

Annotation

kegg
ID rcu:RCOM_0424630
description glycerol-3-phosphate dehydrogenase, putative (EC:1.1.1.94)
nr
ID XP_012086218.1
description PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic [Jatropha curcas]
swissprot
ID O22216
description Glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic OS=Arabidopsis thaliana GN=GPDHC1 PE=2 SV=1
trembl
ID A0A067K2R6
description Glycerol-3-phosphate dehydrogenase [NAD(+)] OS=Jatropha curcas GN=JCGZ_21122 PE=3 SV=1
Gene Ontology
ID GO:0009331
description glycerol-3-phosphate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26898: 27393-30918 , PASA_asmbl_26899: 27442-28251
cDNA
(Sanger)
(ID:Location)		 021_C05.ab1: 27442-28189

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002596_030 0.0 - - PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic [Jatropha curcas]
2 Hb_002701_120 0.1728089292 - - PREDICTED: uncharacterized protein LOC105646751 [Jatropha curcas]
3 Hb_000390_310 0.182907034 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
4 Hb_005276_130 0.1880304706 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005527_010 0.1884350027 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_000175_590 0.1887609525 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
7 Hb_000694_030 0.1928189983 - - PREDICTED: nucleobase-ascorbate transporter 1 [Jatropha curcas]
8 Hb_006816_330 0.1928431084 - - exonuclease, putative [Ricinus communis]
9 Hb_003861_070 0.1956068444 - - PREDICTED: uncharacterized protein LOC105650781 [Jatropha curcas]
10 Hb_158092_030 0.1973255009 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic [Jatropha curcas]
11 Hb_029142_030 0.1975840295 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
12 Hb_004994_320 0.2033128812 - - PREDICTED: putative ripening-related protein 1 [Cicer arietinum]
13 Hb_027402_090 0.203911363 - - endonuclease, putative [Ricinus communis]
14 Hb_000424_020 0.2059327329 - - Uncharacterized protein TCM_037386 [Theobroma cacao]
15 Hb_002450_040 0.2063798918 - - PREDICTED: DNA-directed RNA polymerases II and V subunit 6B [Vitis vinifera]
16 Hb_002783_020 0.2087703218 - - PREDICTED: synaptotagmin-2 isoform X4 [Jatropha curcas]
17 Hb_004951_070 0.2097111194 desease resistance Gene Name: AAA Stage III sporulation protein AA, putative [Ricinus communis]
18 Hb_002986_080 0.2107433516 - - PREDICTED: cyclin-dependent kinase inhibitor 7 [Jatropha curcas]
19 Hb_000958_130 0.2137101026 - - PREDICTED: uncharacterized protein LOC105628716 isoform X1 [Jatropha curcas]
20 Hb_004176_060 0.2143862835 - - -

Gene co-expression network

sample Hb_002596_030 Hb_002596_030 Hb_002701_120 Hb_002701_120 Hb_002596_030--Hb_002701_120 Hb_000390_310 Hb_000390_310 Hb_002596_030--Hb_000390_310 Hb_005276_130 Hb_005276_130 Hb_002596_030--Hb_005276_130 Hb_005527_010 Hb_005527_010 Hb_002596_030--Hb_005527_010 Hb_000175_590 Hb_000175_590 Hb_002596_030--Hb_000175_590 Hb_000694_030 Hb_000694_030 Hb_002596_030--Hb_000694_030 Hb_002701_120--Hb_005527_010 Hb_002701_120--Hb_000694_030 Hb_006618_070 Hb_006618_070 Hb_002701_120--Hb_006618_070 Hb_011310_140 Hb_011310_140 Hb_002701_120--Hb_011310_140 Hb_000284_130 Hb_000284_130 Hb_002701_120--Hb_000284_130 Hb_005038_030 Hb_005038_030 Hb_002701_120--Hb_005038_030 Hb_000948_180 Hb_000948_180 Hb_000390_310--Hb_000948_180 Hb_032202_230 Hb_032202_230 Hb_000390_310--Hb_032202_230 Hb_004951_070 Hb_004951_070 Hb_000390_310--Hb_004951_070 Hb_000390_310--Hb_000175_590 Hb_001652_080 Hb_001652_080 Hb_000390_310--Hb_001652_080 Hb_001213_130 Hb_001213_130 Hb_000390_310--Hb_001213_130 Hb_158092_030 Hb_158092_030 Hb_005276_130--Hb_158092_030 Hb_005276_130--Hb_000175_590 Hb_003752_070 Hb_003752_070 Hb_005276_130--Hb_003752_070 Hb_001232_150 Hb_001232_150 Hb_005276_130--Hb_001232_150 Hb_021650_010 Hb_021650_010 Hb_005276_130--Hb_021650_010 Hb_005276_130--Hb_005527_010 Hb_000061_150 Hb_000061_150 Hb_005527_010--Hb_000061_150 Hb_005527_010--Hb_000694_030 Hb_005527_010--Hb_011310_140 Hb_066967_020 Hb_066967_020 Hb_005527_010--Hb_066967_020 Hb_000175_590--Hb_004951_070 Hb_065525_130 Hb_065525_130 Hb_000175_590--Hb_065525_130 Hb_000175_590--Hb_001652_080 Hb_000175_590--Hb_032202_230 Hb_000694_030--Hb_066967_020 Hb_000694_030--Hb_006618_070 Hb_001959_240 Hb_001959_240 Hb_000694_030--Hb_001959_240 Hb_029142_030 Hb_029142_030 Hb_000694_030--Hb_029142_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.0264 1.40224 52.2279 7.96715 38.5842 20.5321
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.0243 8.77125 4.41155 1.64399 19.4232

CAGE analysis