Hb_002596_100

Information

Type -
Description -
Location Contig2596: 131279-132262
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002596_100 0.0 - - -
2 Hb_003687_050 0.0001381739 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000441_240 0.0006822847 - - hypothetical protein ZEAMMB73_005804 [Zea mays]
4 Hb_001031_070 0.0008741353 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase CES101 [Jatropha curcas]
5 Hb_001031_100 0.0010531532 - - -
6 Hb_071079_030 0.0012620788 transcription factor TF Family: MYB-related PREDICTED: transcription factor TRY-like [Populus euphratica]
7 Hb_000724_010 0.0015688932 - - PREDICTED: uncharacterized protein LOC105134348 [Populus euphratica]
8 Hb_080359_020 0.002273036 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
9 Hb_027556_050 0.0024376125 - - hypothetical protein PHAVU_001G166100g [Phaseolus vulgaris]
10 Hb_000938_010 0.0025138253 - - polyprotein [Oryza australiensis]
11 Hb_000345_090 0.0029387648 - - Cell cycle checkpoint control protein family isoform 5 [Theobroma cacao]
12 Hb_159542_010 0.0050335208 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
13 Hb_000705_320 0.0056282735 - - Transcriptional regulator SUPERMAN, putative [Ricinus communis]
14 Hb_000696_180 0.0064832626 - - cysteine protease, putative [Ricinus communis]
15 Hb_005625_030 0.0086831732 - - ribosomal protein S12 (mitochondrion) [Chrysobalanus icaco]
16 Hb_070810_010 0.0088522695 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
17 Hb_011444_050 0.0094851887 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
18 Hb_000329_240 0.0100001234 transcription factor TF Family: PLATZ zinc ion binding protein, putative [Ricinus communis]
19 Hb_073174_010 0.0102375731 - - PREDICTED: MLP-like protein 328 [Jatropha curcas]
20 Hb_163720_010 0.0109686249 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]

Gene co-expression network

sample Hb_002596_100 Hb_002596_100 Hb_003687_050 Hb_003687_050 Hb_002596_100--Hb_003687_050 Hb_000441_240 Hb_000441_240 Hb_002596_100--Hb_000441_240 Hb_001031_070 Hb_001031_070 Hb_002596_100--Hb_001031_070 Hb_001031_100 Hb_001031_100 Hb_002596_100--Hb_001031_100 Hb_071079_030 Hb_071079_030 Hb_002596_100--Hb_071079_030 Hb_000724_010 Hb_000724_010 Hb_002596_100--Hb_000724_010 Hb_003687_050--Hb_000441_240 Hb_003687_050--Hb_001031_070 Hb_003687_050--Hb_071079_030 Hb_003687_050--Hb_001031_100 Hb_003687_050--Hb_000724_010 Hb_000441_240--Hb_001031_070 Hb_000441_240--Hb_071079_030 Hb_000441_240--Hb_001031_100 Hb_000938_010 Hb_000938_010 Hb_000441_240--Hb_000938_010 Hb_001031_070--Hb_071079_030 Hb_001031_070--Hb_000938_010 Hb_001031_070--Hb_001031_100 Hb_001031_100--Hb_000724_010 Hb_080359_020 Hb_080359_020 Hb_001031_100--Hb_080359_020 Hb_027556_050 Hb_027556_050 Hb_001031_100--Hb_027556_050 Hb_071079_030--Hb_000938_010 Hb_071079_030--Hb_001031_100 Hb_000724_010--Hb_080359_020 Hb_000724_010--Hb_027556_050 Hb_000345_090 Hb_000345_090 Hb_000724_010--Hb_000345_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.018183 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.017615 0

CAGE analysis