Hb_002597_010

Information

Type -
Description -
Location Contig2597: 2644-5533
Sequence    

Annotation

kegg
ID mdm:103417554
description putative disease resistance protein RGA1
nr
ID XP_008353951.1
description PREDICTED: putative disease resistance protein RGA1 [Malus domestica]
swissprot
ID -
description -
trembl
ID U5FLH1
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0017s015601g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26918: 2410-3923
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002597_010 0.0 - - PREDICTED: putative disease resistance protein RGA1 [Malus domestica]
2 Hb_000032_560 0.1120032125 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
3 Hb_000005_230 0.1157336775 - - hypothetical protein POPTR_0009s01160g [Populus trichocarpa]
4 Hb_002016_020 0.1285842338 - - RALFL33, putative [Ricinus communis]
5 Hb_080147_060 0.1289174319 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
6 Hb_000347_230 0.1302201907 - - inter-alpha-trypsin inhibitor heavy chain, putative [Ricinus communis]
7 Hb_018133_110 0.1302611816 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
8 Hb_001369_620 0.1397917735 - - PREDICTED: protein EXORDIUM-like 3 [Jatropha curcas]
9 Hb_000041_290 0.1415982959 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
10 Hb_000380_210 0.1447404515 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
11 Hb_000580_070 0.1471549614 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
12 Hb_006618_080 0.1476867493 - - PREDICTED: non-specific lipid-transfer protein [Jatropha curcas]
13 Hb_000589_210 0.1499290892 - - PREDICTED: uncharacterized protein LOC105647439 [Jatropha curcas]
14 Hb_006788_010 0.152653001 - - PREDICTED: calcium-transporting ATPase 12, plasma membrane-type [Jatropha curcas]
15 Hb_025254_020 0.1569548681 - - PREDICTED: formate dehydrogenase, mitochondrial [Vitis vinifera]
16 Hb_008066_060 0.1575705281 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease SBT1.6 [Jatropha curcas]
17 Hb_135811_040 0.1613358211 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001959_030 0.1614533441 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007545_140 0.1618017834 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
20 Hb_118707_020 0.1622537715 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002597_010 Hb_002597_010 Hb_000032_560 Hb_000032_560 Hb_002597_010--Hb_000032_560 Hb_000005_230 Hb_000005_230 Hb_002597_010--Hb_000005_230 Hb_002016_020 Hb_002016_020 Hb_002597_010--Hb_002016_020 Hb_080147_060 Hb_080147_060 Hb_002597_010--Hb_080147_060 Hb_000347_230 Hb_000347_230 Hb_002597_010--Hb_000347_230 Hb_018133_110 Hb_018133_110 Hb_002597_010--Hb_018133_110 Hb_000032_560--Hb_018133_110 Hb_000580_070 Hb_000580_070 Hb_000032_560--Hb_000580_070 Hb_118707_020 Hb_118707_020 Hb_000032_560--Hb_118707_020 Hb_135811_040 Hb_135811_040 Hb_000032_560--Hb_135811_040 Hb_000276_030 Hb_000276_030 Hb_000032_560--Hb_000276_030 Hb_006788_010 Hb_006788_010 Hb_000005_230--Hb_006788_010 Hb_006618_080 Hb_006618_080 Hb_000005_230--Hb_006618_080 Hb_000005_230--Hb_000032_560 Hb_007313_010 Hb_007313_010 Hb_000005_230--Hb_007313_010 Hb_000005_230--Hb_000347_230 Hb_001369_620 Hb_001369_620 Hb_002016_020--Hb_001369_620 Hb_002016_020--Hb_135811_040 Hb_002016_020--Hb_000032_560 Hb_001959_030 Hb_001959_030 Hb_002016_020--Hb_001959_030 Hb_002016_020--Hb_000580_070 Hb_000003_510 Hb_000003_510 Hb_080147_060--Hb_000003_510 Hb_000041_290 Hb_000041_290 Hb_080147_060--Hb_000041_290 Hb_080147_060--Hb_002016_020 Hb_080147_060--Hb_000580_070 Hb_080147_060--Hb_001959_030 Hb_000347_230--Hb_018133_110 Hb_000347_230--Hb_006618_080 Hb_001623_400 Hb_001623_400 Hb_000347_230--Hb_001623_400 Hb_000347_230--Hb_000032_560 Hb_098030_010 Hb_098030_010 Hb_000347_230--Hb_098030_010 Hb_003734_120 Hb_003734_120 Hb_000347_230--Hb_003734_120 Hb_002042_200 Hb_002042_200 Hb_018133_110--Hb_002042_200 Hb_018133_110--Hb_000580_070 Hb_002301_420 Hb_002301_420 Hb_018133_110--Hb_002301_420 Hb_018133_110--Hb_003734_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0549897 0.605757 0.778319 2.28296 0.0206122 0.135588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.100725 0.0792203 0.0729318 4.93741 0.243185

CAGE analysis