Hb_002598_020

Information

Type -
Description -
Location Contig2598: 6282-7400
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02880g
description POPTRDRAFT_1096353; sugar transporter family protein
nr
ID XP_011048905.1
description PREDICTED: sugar transporter ERD6-like 5 [Populus euphratica]
swissprot
ID Q3ECP7
description Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2
trembl
ID B9I803
description Sugar transporter family protein OS=Populus trichocarpa GN=POPTR_0013s02880g PE=3 SV=1
Gene Ontology
ID GO:0016021
description sugar transporter erd6-like 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26924: 6837-6998 , PASA_asmbl_26925: 7000-51283
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002598_020 0.0 - - PREDICTED: sugar transporter ERD6-like 5 [Populus euphratica]
2 Hb_000537_090 0.0713931789 - - conserved hypothetical protein [Ricinus communis]
3 Hb_026144_040 0.0910574017 - - -
4 Hb_000162_070 0.092983808 - - phospholipase C, putative [Ricinus communis]
5 Hb_000090_020 0.0951015004 - - acyltransferase, putative [Ricinus communis]
6 Hb_008598_010 0.1008034032 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
7 Hb_001318_230 0.1039194486 - - Boron transporter, putative [Ricinus communis]
8 Hb_000732_100 0.1040615457 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
9 Hb_000899_060 0.1053641856 - - PREDICTED: uncharacterized protein LOC105793631 [Gossypium raimondii]
10 Hb_103541_010 0.1064633291 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
11 Hb_002374_520 0.1066245425 - - early nodulin 8 precursor family protein [Populus trichocarpa]
12 Hb_000384_020 0.1078248128 - - sucrose phosphate syntase, putative [Ricinus communis]
13 Hb_008948_010 0.1081968435 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
14 Hb_001913_030 0.1091771741 - - ankyrin repeat protein [Bruguiera gymnorhiza]
15 Hb_000816_150 0.1111418019 - - oligopeptide transporter, putative [Ricinus communis]
16 Hb_000468_050 0.112000308 - - -
17 Hb_173107_020 0.1136765324 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
18 Hb_000991_080 0.1170617866 - - kinase, putative [Ricinus communis]
19 Hb_001013_080 0.1182764814 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
20 Hb_004785_170 0.1187458371 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]

Gene co-expression network

sample Hb_002598_020 Hb_002598_020 Hb_000537_090 Hb_000537_090 Hb_002598_020--Hb_000537_090 Hb_026144_040 Hb_026144_040 Hb_002598_020--Hb_026144_040 Hb_000162_070 Hb_000162_070 Hb_002598_020--Hb_000162_070 Hb_000090_020 Hb_000090_020 Hb_002598_020--Hb_000090_020 Hb_008598_010 Hb_008598_010 Hb_002598_020--Hb_008598_010 Hb_001318_230 Hb_001318_230 Hb_002598_020--Hb_001318_230 Hb_001913_030 Hb_001913_030 Hb_000537_090--Hb_001913_030 Hb_000732_100 Hb_000732_100 Hb_000537_090--Hb_000732_100 Hb_001269_530 Hb_001269_530 Hb_000537_090--Hb_001269_530 Hb_000537_090--Hb_001318_230 Hb_001013_080 Hb_001013_080 Hb_000537_090--Hb_001013_080 Hb_007237_080 Hb_007237_080 Hb_026144_040--Hb_007237_080 Hb_026144_040--Hb_008598_010 Hb_026144_040--Hb_000162_070 Hb_000045_080 Hb_000045_080 Hb_026144_040--Hb_000045_080 Hb_002151_020 Hb_002151_020 Hb_026144_040--Hb_002151_020 Hb_000162_070--Hb_008598_010 Hb_000162_070--Hb_007237_080 Hb_000162_070--Hb_000045_080 Hb_000991_080 Hb_000991_080 Hb_000162_070--Hb_000991_080 Hb_002811_110 Hb_002811_110 Hb_000162_070--Hb_002811_110 Hb_103541_010 Hb_103541_010 Hb_000090_020--Hb_103541_010 Hb_012553_030 Hb_012553_030 Hb_000090_020--Hb_012553_030 Hb_000090_020--Hb_000537_090 Hb_000090_020--Hb_000732_100 Hb_000090_020--Hb_001318_230 Hb_008598_010--Hb_000045_080 Hb_008598_010--Hb_002151_020 Hb_144703_010 Hb_144703_010 Hb_008598_010--Hb_144703_010 Hb_000069_540 Hb_000069_540 Hb_008598_010--Hb_000069_540 Hb_001318_230--Hb_000732_100 Hb_001907_050 Hb_001907_050 Hb_001318_230--Hb_001907_050 Hb_004785_170 Hb_004785_170 Hb_001318_230--Hb_004785_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.47768 2.01697 12.8948 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.81707 5.14762

CAGE analysis