Hb_002600_060

Information

Type -
Description -
Location Contig2600: 61953-71113
Sequence    

Annotation

kegg
ID rcu:RCOM_0597440
description DNA double-strand break repair rad50 ATPase, putative
nr
ID XP_012077927.1
description PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
swissprot
ID F4HRT5
description Protein CROWDED NUCLEI 1 OS=Arabidopsis thaliana GN=CRWN1 PE=1 SV=1
trembl
ID A0A067KKX3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12956 PE=4 SV=1
Gene Ontology
ID GO:0005652
description nuclear matrix constituent protein 1-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27085: 61948-71092 , PASA_asmbl_27086: 61948-71092 , PASA_asmbl_27087: 62053-68879
cDNA
(Sanger)
(ID:Location)		 006_C04.ab1: 61948-64685 , 007_E11.ab1: 67516-68483 , 013_F07.ab1: 67516-68483 , 041_K01.ab1: 61948-64686

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002600_060 0.0 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
2 Hb_000331_560 0.0529647632 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
3 Hb_000925_090 0.0549595632 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
4 Hb_005211_020 0.0667850467 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
5 Hb_001133_030 0.0685846842 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
6 Hb_005488_170 0.0687262627 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
7 Hb_000083_070 0.0693664863 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
8 Hb_012244_020 0.0700983276 - - calpain, putative [Ricinus communis]
9 Hb_000608_300 0.0707505435 - - PREDICTED: protein KRI1 homolog [Jatropha curcas]
10 Hb_007545_130 0.0737749784 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
11 Hb_003506_050 0.074622406 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_002636_110 0.0771329692 - - PREDICTED: heat shock protein 83-like isoform X2 [Gossypium raimondii]
13 Hb_000059_230 0.0795885714 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
14 Hb_012053_090 0.0812707222 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
15 Hb_002328_040 0.0820581084 - - PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Jatropha curcas]
16 Hb_000958_050 0.0823775767 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
17 Hb_005701_130 0.0825154085 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
18 Hb_005348_010 0.0837936187 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003203_030 0.086404352 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
20 Hb_002909_120 0.0864833269 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]

Gene co-expression network

sample Hb_002600_060 Hb_002600_060 Hb_000331_560 Hb_000331_560 Hb_002600_060--Hb_000331_560 Hb_000925_090 Hb_000925_090 Hb_002600_060--Hb_000925_090 Hb_005211_020 Hb_005211_020 Hb_002600_060--Hb_005211_020 Hb_001133_030 Hb_001133_030 Hb_002600_060--Hb_001133_030 Hb_005488_170 Hb_005488_170 Hb_002600_060--Hb_005488_170 Hb_000083_070 Hb_000083_070 Hb_002600_060--Hb_000083_070 Hb_003203_030 Hb_003203_030 Hb_000331_560--Hb_003203_030 Hb_018118_010 Hb_018118_010 Hb_000331_560--Hb_018118_010 Hb_003506_050 Hb_003506_050 Hb_000331_560--Hb_003506_050 Hb_000300_120 Hb_000300_120 Hb_000331_560--Hb_000300_120 Hb_009252_040 Hb_009252_040 Hb_000331_560--Hb_009252_040 Hb_000925_090--Hb_001133_030 Hb_012244_020 Hb_012244_020 Hb_000925_090--Hb_012244_020 Hb_000925_090--Hb_000083_070 Hb_009486_170 Hb_009486_170 Hb_000925_090--Hb_009486_170 Hb_001726_100 Hb_001726_100 Hb_000925_090--Hb_001726_100 Hb_000826_070 Hb_000826_070 Hb_005211_020--Hb_000826_070 Hb_002973_110 Hb_002973_110 Hb_005211_020--Hb_002973_110 Hb_000608_300 Hb_000608_300 Hb_005211_020--Hb_000608_300 Hb_013459_020 Hb_013459_020 Hb_005211_020--Hb_013459_020 Hb_005211_020--Hb_000925_090 Hb_001133_030--Hb_009486_170 Hb_001133_030--Hb_012244_020 Hb_011689_030 Hb_011689_030 Hb_001133_030--Hb_011689_030 Hb_000003_410 Hb_000003_410 Hb_001133_030--Hb_000003_410 Hb_002521_020 Hb_002521_020 Hb_001133_030--Hb_002521_020 Hb_005701_130 Hb_005701_130 Hb_005488_170--Hb_005701_130 Hb_002909_120 Hb_002909_120 Hb_005488_170--Hb_002909_120 Hb_010998_020 Hb_010998_020 Hb_005488_170--Hb_010998_020 Hb_012053_090 Hb_012053_090 Hb_005488_170--Hb_012053_090 Hb_005348_010 Hb_005348_010 Hb_005488_170--Hb_005348_010 Hb_000083_070--Hb_001133_030 Hb_003805_050 Hb_003805_050 Hb_000083_070--Hb_003805_050 Hb_000261_150 Hb_000261_150 Hb_000083_070--Hb_000261_150 Hb_000025_710 Hb_000025_710 Hb_000083_070--Hb_000025_710 Hb_000083_070--Hb_012244_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.4186 49.485 26.7577 24.7319 36.3494 32.1548
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7766 14.4615 20.1935 30.4921 72.3417

CAGE analysis