Hb_002600_080

Information

Type -
Description -
Location Contig2600: 84711-92339
Sequence    

Annotation

kegg
ID rcu:RCOM_0597470
description nucleic acid binding protein, putative
nr
ID XP_002525972.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q6DD45
description Zinc finger CCHC domain-containing protein 8 OS=Xenopus laevis GN=zcchc8 PE=2 SV=1
trembl
ID B9SJ03
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0597470 PE=4 SV=1
Gene Ontology
ID GO:0003676
description proline-rich spliceosome-associated family protein zinc knuckle family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27094: 84703-85318
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002600_080 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
2 Hb_000866_080 0.0910223095 - - PREDICTED: signal peptide peptidase-like 4 isoform X1 [Jatropha curcas]
3 Hb_000003_400 0.0979935444 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
4 Hb_000300_250 0.0986487489 - - polyribonucleotide nucleotidyltransferase, putative [Ricinus communis]
5 Hb_000617_190 0.0992142463 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase [Jatropha curcas]
6 Hb_000699_210 0.1016889266 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
7 Hb_001488_040 0.107461637 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
8 Hb_010775_010 0.1075803008 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
9 Hb_000796_120 0.1084552971 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
10 Hb_011249_060 0.1122770793 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
11 Hb_006615_030 0.1141168729 - - prolyl oligopeptidase family protein [Populus trichocarpa]
12 Hb_009486_160 0.1148863025 - - PREDICTED: metacaspase-1 [Jatropha curcas]
13 Hb_005539_040 0.1160785021 - - PREDICTED: RNA-binding protein 25 isoform X3 [Jatropha curcas]
14 Hb_013358_060 0.1214131096 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
15 Hb_003992_180 0.1217282699 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
16 Hb_002374_290 0.1230460783 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X1 [Jatropha curcas]
17 Hb_002812_010 0.1231842245 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X1 [Jatropha curcas]
18 Hb_000030_140 0.1235029715 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
19 Hb_001488_210 0.1241649906 - - PREDICTED: protein RIK [Jatropha curcas]
20 Hb_001862_110 0.1248474459 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_002600_080 Hb_002600_080 Hb_000866_080 Hb_000866_080 Hb_002600_080--Hb_000866_080 Hb_000003_400 Hb_000003_400 Hb_002600_080--Hb_000003_400 Hb_000300_250 Hb_000300_250 Hb_002600_080--Hb_000300_250 Hb_000617_190 Hb_000617_190 Hb_002600_080--Hb_000617_190 Hb_000699_210 Hb_000699_210 Hb_002600_080--Hb_000699_210 Hb_001488_040 Hb_001488_040 Hb_002600_080--Hb_001488_040 Hb_003895_020 Hb_003895_020 Hb_000866_080--Hb_003895_020 Hb_011249_060 Hb_011249_060 Hb_000866_080--Hb_011249_060 Hb_015183_100 Hb_015183_100 Hb_000866_080--Hb_015183_100 Hb_000866_080--Hb_000300_250 Hb_000917_100 Hb_000917_100 Hb_000866_080--Hb_000917_100 Hb_004310_040 Hb_004310_040 Hb_000866_080--Hb_004310_040 Hb_002811_040 Hb_002811_040 Hb_000003_400--Hb_002811_040 Hb_000094_090 Hb_000094_090 Hb_000003_400--Hb_000094_090 Hb_000868_120 Hb_000868_120 Hb_000003_400--Hb_000868_120 Hb_023226_070 Hb_023226_070 Hb_000003_400--Hb_023226_070 Hb_010287_020 Hb_010287_020 Hb_000003_400--Hb_010287_020 Hb_000445_060 Hb_000445_060 Hb_000003_400--Hb_000445_060 Hb_005539_040 Hb_005539_040 Hb_000300_250--Hb_005539_040 Hb_000086_050 Hb_000086_050 Hb_000300_250--Hb_000086_050 Hb_007576_230 Hb_007576_230 Hb_000300_250--Hb_007576_230 Hb_001221_090 Hb_001221_090 Hb_000300_250--Hb_001221_090 Hb_009449_090 Hb_009449_090 Hb_000300_250--Hb_009449_090 Hb_000665_260 Hb_000665_260 Hb_000617_190--Hb_000665_260 Hb_012539_110 Hb_012539_110 Hb_000617_190--Hb_012539_110 Hb_013358_060 Hb_013358_060 Hb_000617_190--Hb_013358_060 Hb_000856_300 Hb_000856_300 Hb_000617_190--Hb_000856_300 Hb_000035_100 Hb_000035_100 Hb_000617_190--Hb_000035_100 Hb_000699_210--Hb_001488_040 Hb_009486_160 Hb_009486_160 Hb_000699_210--Hb_009486_160 Hb_002387_040 Hb_002387_040 Hb_000699_210--Hb_002387_040 Hb_000638_280 Hb_000638_280 Hb_000699_210--Hb_000638_280 Hb_002897_050 Hb_002897_050 Hb_000699_210--Hb_002897_050 Hb_000796_120 Hb_000796_120 Hb_000699_210--Hb_000796_120 Hb_001862_110 Hb_001862_110 Hb_001488_040--Hb_001862_110 Hb_001488_040--Hb_009486_160 Hb_001427_150 Hb_001427_150 Hb_001488_040--Hb_001427_150 Hb_001488_040--Hb_011249_060 Hb_005765_040 Hb_005765_040 Hb_001488_040--Hb_005765_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.42618 19.1221 10.5577 5.69242 5.45412 3.882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.54575 4.39986 1.02313 6.52978 9.02353

CAGE analysis