Hb_002600_090

Information

Type -
Description -
Location Contig2600: 99609-111946
Sequence    

Annotation

kegg
ID rcu:RCOM_0279180
description ATP binding protein, putative (EC:2.7.11.25)
nr
ID XP_002533638.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9FFW5
description Proline-rich receptor-like protein kinase PERK8 OS=Arabidopsis thaliana GN=PERK8 PE=1 SV=1
trembl
ID B9T5W9
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0279180 PE=3 SV=1
Gene Ontology
ID GO:0005622
description proline-rich receptor-like protein kinase perk8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27096: 100191-112283 , PASA_asmbl_27097: 100197-110887
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002600_090 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_000985_030 0.0677573248 - - PREDICTED: RRP15-like protein [Populus euphratica]
3 Hb_001971_010 0.0681632846 - - F23N19.4 [Arabidopsis thaliana]
4 Hb_000599_250 0.0684585676 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
5 Hb_000260_030 0.0702425206 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
6 Hb_001711_020 0.0709740589 - - PREDICTED: AP-2 complex subunit mu [Jatropha curcas]
7 Hb_001489_080 0.0716480393 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
8 Hb_002235_250 0.0726436435 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
9 Hb_000329_320 0.0755099321 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
10 Hb_000815_070 0.0766813613 - - PREDICTED: methyltransferase-like protein 7A [Jatropha curcas]
11 Hb_004934_100 0.0781965309 - - conserved hypothetical protein [Ricinus communis]
12 Hb_156279_020 0.0788908354 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
13 Hb_005269_070 0.0789218937 - - PREDICTED: translation factor GUF1 homolog, organellar chromatophore [Jatropha curcas]
14 Hb_000869_020 0.0791323718 - - PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]
15 Hb_002871_190 0.080018735 - - PREDICTED: uncharacterized protein LOC105628867 [Jatropha curcas]
16 Hb_005496_140 0.0800407796 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000375_350 0.0801135676 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
18 Hb_011716_130 0.080415886 - - PREDICTED: probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial isoform X5 [Populus euphratica]
19 Hb_002490_020 0.080588845 - - peptidyl-tRNA hydrolase family protein [Populus trichocarpa]
20 Hb_000205_090 0.080757135 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]

Gene co-expression network

sample Hb_002600_090 Hb_002600_090 Hb_000985_030 Hb_000985_030 Hb_002600_090--Hb_000985_030 Hb_001971_010 Hb_001971_010 Hb_002600_090--Hb_001971_010 Hb_000599_250 Hb_000599_250 Hb_002600_090--Hb_000599_250 Hb_000260_030 Hb_000260_030 Hb_002600_090--Hb_000260_030 Hb_001711_020 Hb_001711_020 Hb_002600_090--Hb_001711_020 Hb_001489_080 Hb_001489_080 Hb_002600_090--Hb_001489_080 Hb_000985_030--Hb_001489_080 Hb_002169_040 Hb_002169_040 Hb_000985_030--Hb_002169_040 Hb_000783_020 Hb_000783_020 Hb_000985_030--Hb_000783_020 Hb_000777_040 Hb_000777_040 Hb_000985_030--Hb_000777_040 Hb_005269_070 Hb_005269_070 Hb_000985_030--Hb_005269_070 Hb_004934_100 Hb_004934_100 Hb_000985_030--Hb_004934_100 Hb_001252_130 Hb_001252_130 Hb_001971_010--Hb_001252_130 Hb_000331_260 Hb_000331_260 Hb_001971_010--Hb_000331_260 Hb_002235_250 Hb_002235_250 Hb_001971_010--Hb_002235_250 Hb_006478_020 Hb_006478_020 Hb_001971_010--Hb_006478_020 Hb_000172_290 Hb_000172_290 Hb_001971_010--Hb_000172_290 Hb_000599_250--Hb_004934_100 Hb_000599_250--Hb_001711_020 Hb_000375_350 Hb_000375_350 Hb_000599_250--Hb_000375_350 Hb_001300_150 Hb_001300_150 Hb_000599_250--Hb_001300_150 Hb_005496_140 Hb_005496_140 Hb_000599_250--Hb_005496_140 Hb_002641_060 Hb_002641_060 Hb_000599_250--Hb_002641_060 Hb_050514_010 Hb_050514_010 Hb_000260_030--Hb_050514_010 Hb_004109_170 Hb_004109_170 Hb_000260_030--Hb_004109_170 Hb_029879_130 Hb_029879_130 Hb_000260_030--Hb_029879_130 Hb_000827_050 Hb_000827_050 Hb_000260_030--Hb_000827_050 Hb_000260_030--Hb_001300_150 Hb_000614_160 Hb_000614_160 Hb_000260_030--Hb_000614_160 Hb_001711_020--Hb_004934_100 Hb_001711_020--Hb_001300_150 Hb_001711_020--Hb_001971_010 Hb_001711_020--Hb_000375_350 Hb_001489_080--Hb_004934_100 Hb_001489_080--Hb_000783_020 Hb_001489_080--Hb_000599_250 Hb_000003_230 Hb_000003_230 Hb_001489_080--Hb_000003_230 Hb_001489_080--Hb_002169_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6662 5.96559 13.3911 11.515 9.20104 10.3306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.4203 16.2995 15.7307 10.5391 14.1479

CAGE analysis