Hb_002600_110

Information

Type -
Description -
Location Contig2600: 128913-131703
Sequence    

Annotation

kegg
ID pop:POPTR_0004s10540g
description POPTRDRAFT_1076074; hypothetical protein
nr
ID XP_002305969.2
description hypothetical protein POPTR_0004s10540g [Populus trichocarpa]
swissprot
ID Q9LFT0
description Protein trichome birefringence-like 19 OS=Arabidopsis thaliana GN=TBL19 PE=3 SV=1
trembl
ID B9H3S5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s10540g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002600_110 0.0 - - hypothetical protein POPTR_0004s10540g [Populus trichocarpa]
2 Hb_183479_030 0.0603780173 - - Photosystem I reaction center subunit V, chloroplast precursor, putative [Ricinus communis]
3 Hb_000768_080 0.0645871185 - - Mlo protein [Hevea brasiliensis]
4 Hb_048694_010 0.0673809642 - - catalytic, putative [Ricinus communis]
5 Hb_001775_010 0.0706212626 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001080_290 0.0715998364 - - PSI reaction center subunit II [Citrus sinensis]
7 Hb_002445_020 0.0741810774 - - -
8 Hb_003622_050 0.0761447624 - - PREDICTED: respiratory burst oxidase homolog protein A-like [Jatropha curcas]
9 Hb_003952_030 0.0776334715 - - hypothetical protein JCGZ_16620 [Jatropha curcas]
10 Hb_000940_120 0.0799675673 - - PREDICTED: proline-rich protein 4-like isoform X2 [Pyrus x bretschneideri]
11 Hb_001140_110 0.0879124762 - - hypothetical protein JCGZ_26123 [Jatropha curcas]
12 Hb_004197_030 0.0917107561 - - hypothetical protein JCGZ_16263 [Jatropha curcas]
13 Hb_001951_050 0.0922529925 - - chlorophyll A/B binding protein, putative [Ricinus communis]
14 Hb_009004_020 0.0924161294 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
15 Hb_006272_010 0.0942019627 - - PREDICTED: cytochrome P450 86B1 [Vitis vinifera]
16 Hb_009095_020 0.0964331731 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
17 Hb_005171_020 0.0971567246 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
18 Hb_000844_060 0.097566062 - - PREDICTED: uncharacterized protein LOC105633706 [Jatropha curcas]
19 Hb_042123_010 0.0975864456 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]
20 Hb_000645_270 0.0982514454 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_002600_110 Hb_002600_110 Hb_183479_030 Hb_183479_030 Hb_002600_110--Hb_183479_030 Hb_000768_080 Hb_000768_080 Hb_002600_110--Hb_000768_080 Hb_048694_010 Hb_048694_010 Hb_002600_110--Hb_048694_010 Hb_001775_010 Hb_001775_010 Hb_002600_110--Hb_001775_010 Hb_001080_290 Hb_001080_290 Hb_002600_110--Hb_001080_290 Hb_002445_020 Hb_002445_020 Hb_002600_110--Hb_002445_020 Hb_006272_010 Hb_006272_010 Hb_183479_030--Hb_006272_010 Hb_005171_020 Hb_005171_020 Hb_183479_030--Hb_005171_020 Hb_043327_010 Hb_043327_010 Hb_183479_030--Hb_043327_010 Hb_003952_030 Hb_003952_030 Hb_183479_030--Hb_003952_030 Hb_001715_050 Hb_001715_050 Hb_183479_030--Hb_001715_050 Hb_000768_080--Hb_001775_010 Hb_008864_050 Hb_008864_050 Hb_000768_080--Hb_008864_050 Hb_010021_040 Hb_010021_040 Hb_000768_080--Hb_010021_040 Hb_000768_080--Hb_001080_290 Hb_000768_080--Hb_002445_020 Hb_006331_010 Hb_006331_010 Hb_048694_010--Hb_006331_010 Hb_048694_010--Hb_183479_030 Hb_048694_010--Hb_006272_010 Hb_048694_010--Hb_001715_050 Hb_083242_040 Hb_083242_040 Hb_048694_010--Hb_083242_040 Hb_001775_010--Hb_008864_050 Hb_001775_010--Hb_001080_290 Hb_001775_010--Hb_010021_040 Hb_001951_050 Hb_001951_050 Hb_001775_010--Hb_001951_050 Hb_001080_290--Hb_001951_050 Hb_001140_110 Hb_001140_110 Hb_001080_290--Hb_001140_110 Hb_077976_010 Hb_077976_010 Hb_001080_290--Hb_077976_010 Hb_042123_010 Hb_042123_010 Hb_001080_290--Hb_042123_010 Hb_001097_110 Hb_001097_110 Hb_001080_290--Hb_001097_110 Hb_002764_020 Hb_002764_020 Hb_002445_020--Hb_002764_020 Hb_000920_340 Hb_000920_340 Hb_002445_020--Hb_000920_340 Hb_002445_020--Hb_042123_010 Hb_007718_040 Hb_007718_040 Hb_002445_020--Hb_007718_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.509498 2.72563 8.03507 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.151481 51.9759

CAGE analysis