Hb_002600_120

Information

Type -
Description -
Location Contig2600: 135914-136111
Sequence    

Annotation

kegg
ID vvi:104881612
description uncharacterized LOC104881612
nr
ID KDP24356.1
description hypothetical protein JCGZ_25652 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JK47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25652 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27100: 135449-136389
cDNA
(Sanger)
(ID:Location)		 008_K16.ab1: 135655-136231

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002600_120 0.0 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
2 Hb_004531_160 0.0906413175 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
3 Hb_002701_030 0.0973967507 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
4 Hb_010142_060 0.0996264074 - - Blue copper protein precursor, putative [Ricinus communis]
5 Hb_003849_170 0.100867437 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
6 Hb_000093_010 0.1013423179 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
7 Hb_005648_020 0.1019243823 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
8 Hb_003607_090 0.1039629514 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
9 Hb_005332_160 0.1040639002 - - PREDICTED: BAG family molecular chaperone regulator 2-like [Jatropha curcas]
10 Hb_001584_270 0.105997295 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003893_180 0.1086185586 - - PREDICTED: uncharacterized protein LOC105648771 [Jatropha curcas]
12 Hb_000103_070 0.1092274653 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
13 Hb_000163_170 0.1130520041 - - -
14 Hb_001534_140 0.1142686102 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
15 Hb_000866_130 0.1173177736 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
16 Hb_003376_140 0.1189426139 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
17 Hb_000910_030 0.1194911507 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003090_220 0.1199146508 - - PREDICTED: copper transporter 4 [Jatropha curcas]
19 Hb_000408_060 0.120407971 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
20 Hb_003466_010 0.1223628112 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]

Gene co-expression network

sample Hb_002600_120 Hb_002600_120 Hb_004531_160 Hb_004531_160 Hb_002600_120--Hb_004531_160 Hb_002701_030 Hb_002701_030 Hb_002600_120--Hb_002701_030 Hb_010142_060 Hb_010142_060 Hb_002600_120--Hb_010142_060 Hb_003849_170 Hb_003849_170 Hb_002600_120--Hb_003849_170 Hb_000093_010 Hb_000093_010 Hb_002600_120--Hb_000093_010 Hb_005648_020 Hb_005648_020 Hb_002600_120--Hb_005648_020 Hb_004531_160--Hb_010142_060 Hb_003376_140 Hb_003376_140 Hb_004531_160--Hb_003376_140 Hb_001079_050 Hb_001079_050 Hb_004531_160--Hb_001079_050 Hb_003607_090 Hb_003607_090 Hb_004531_160--Hb_003607_090 Hb_004531_160--Hb_005648_020 Hb_000017_250 Hb_000017_250 Hb_002701_030--Hb_000017_250 Hb_002701_030--Hb_005648_020 Hb_002701_030--Hb_003849_170 Hb_002701_030--Hb_004531_160 Hb_000997_080 Hb_000997_080 Hb_002701_030--Hb_000997_080 Hb_001534_140 Hb_001534_140 Hb_010142_060--Hb_001534_140 Hb_000676_230 Hb_000676_230 Hb_010142_060--Hb_000676_230 Hb_000368_050 Hb_000368_050 Hb_010142_060--Hb_000368_050 Hb_004032_290 Hb_004032_290 Hb_010142_060--Hb_004032_290 Hb_000395_310 Hb_000395_310 Hb_010142_060--Hb_000395_310 Hb_001257_140 Hb_001257_140 Hb_003849_170--Hb_001257_140 Hb_170077_020 Hb_170077_020 Hb_003849_170--Hb_170077_020 Hb_003849_170--Hb_005648_020 Hb_005144_150 Hb_005144_150 Hb_003849_170--Hb_005144_150 Hb_002616_020 Hb_002616_020 Hb_003849_170--Hb_002616_020 Hb_000352_360 Hb_000352_360 Hb_003849_170--Hb_000352_360 Hb_003607_080 Hb_003607_080 Hb_000093_010--Hb_003607_080 Hb_003466_010 Hb_003466_010 Hb_000093_010--Hb_003466_010 Hb_000093_010--Hb_005648_020 Hb_008021_050 Hb_008021_050 Hb_000093_010--Hb_008021_050 Hb_000093_010--Hb_000395_310 Hb_001688_030 Hb_001688_030 Hb_000093_010--Hb_001688_030 Hb_005648_020--Hb_003466_010 Hb_005648_020--Hb_003607_080 Hb_009736_020 Hb_009736_020 Hb_005648_020--Hb_009736_020 Hb_005648_020--Hb_170077_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 27.4189 112.077 530.366 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 6.22001 0 49.2996 136.911

CAGE analysis