Hb_002600_140

Information

Type -
Description -
Location Contig2600: 165533-166691
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa006440mg
description hypothetical protein
nr
ID XP_012088138.1
description PREDICTED: protein FLX-like 2 [Jatropha curcas]
swissprot
ID Q84TD8
description Protein FLX-like 2 OS=Arabidopsis thaliana GN=FLXL2 PE=1 SV=1
trembl
ID A0A067JXT6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25650 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27104: 151167-165571 , PASA_asmbl_27105: 165744-166401
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002600_140 0.0 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
2 Hb_011716_020 0.0701437248 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
3 Hb_002974_060 0.0745615023 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]
4 Hb_000236_310 0.0859455736 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Malus domestica]
5 Hb_005228_130 0.091004704 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_007026_040 0.0980658127 - - PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]
7 Hb_007805_010 0.1000688972 - - PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]
8 Hb_007380_090 0.1041154437 - - -
9 Hb_002551_070 0.1045891777 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
10 Hb_000071_180 0.1049459038 - - PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29 isoform X1 [Jatropha curcas]
11 Hb_005679_050 0.1062143484 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_000023_190 0.1063924791 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
13 Hb_002493_020 0.1073166446 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
14 Hb_000470_080 0.1080077566 - - Caldesmon, putative [Ricinus communis]
15 Hb_000271_090 0.1091157999 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_001416_070 0.1095009214 - - oxidoreductase, putative [Ricinus communis]
17 Hb_028912_040 0.1101429608 - - hypothetical protein POPTR_0016s03250g [Populus trichocarpa]
18 Hb_000785_040 0.110375727 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
19 Hb_001488_410 0.1109644534 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
20 Hb_003916_010 0.1134340867 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]

Gene co-expression network

sample Hb_002600_140 Hb_002600_140 Hb_011716_020 Hb_011716_020 Hb_002600_140--Hb_011716_020 Hb_002974_060 Hb_002974_060 Hb_002600_140--Hb_002974_060 Hb_000236_310 Hb_000236_310 Hb_002600_140--Hb_000236_310 Hb_005228_130 Hb_005228_130 Hb_002600_140--Hb_005228_130 Hb_007026_040 Hb_007026_040 Hb_002600_140--Hb_007026_040 Hb_007805_010 Hb_007805_010 Hb_002600_140--Hb_007805_010 Hb_002028_170 Hb_002028_170 Hb_011716_020--Hb_002028_170 Hb_011716_020--Hb_002974_060 Hb_000023_190 Hb_000023_190 Hb_011716_020--Hb_000023_190 Hb_002027_270 Hb_002027_270 Hb_011716_020--Hb_002027_270 Hb_000600_070 Hb_000600_070 Hb_011716_020--Hb_000600_070 Hb_002551_070 Hb_002551_070 Hb_002974_060--Hb_002551_070 Hb_001496_070 Hb_001496_070 Hb_002974_060--Hb_001496_070 Hb_000446_120 Hb_000446_120 Hb_002974_060--Hb_000446_120 Hb_116929_010 Hb_116929_010 Hb_002974_060--Hb_116929_010 Hb_000236_310--Hb_005228_130 Hb_001449_040 Hb_001449_040 Hb_000236_310--Hb_001449_040 Hb_000613_050 Hb_000613_050 Hb_000236_310--Hb_000613_050 Hb_000236_310--Hb_011716_020 Hb_000127_040 Hb_000127_040 Hb_000236_310--Hb_000127_040 Hb_000271_090 Hb_000271_090 Hb_005228_130--Hb_000271_090 Hb_017358_040 Hb_017358_040 Hb_005228_130--Hb_017358_040 Hb_009476_040 Hb_009476_040 Hb_005228_130--Hb_009476_040 Hb_005228_130--Hb_011716_020 Hb_162603_010 Hb_162603_010 Hb_007026_040--Hb_162603_010 Hb_103760_010 Hb_103760_010 Hb_007026_040--Hb_103760_010 Hb_007026_040--Hb_000236_310 Hb_032050_040 Hb_032050_040 Hb_007026_040--Hb_032050_040 Hb_000718_080 Hb_000718_080 Hb_007026_040--Hb_000718_080 Hb_007805_010--Hb_002551_070 Hb_007805_010--Hb_002974_060 Hb_005679_050 Hb_005679_050 Hb_007805_010--Hb_005679_050 Hb_000470_080 Hb_000470_080 Hb_007805_010--Hb_000470_080 Hb_007805_010--Hb_000236_310 Hb_188126_010 Hb_188126_010 Hb_007805_010--Hb_188126_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.93674 4.26344 2.85469 7.42714 10.4369 19.7557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.2108 5.07319 5.67906 11.3489 8.66981

CAGE analysis