Hb_002601_130

Information

Type -
Description -
Location Contig2601: 118341-123892
Sequence    

Annotation

kegg
ID rcu:RCOM_0897010
description Plastidic ATP/ADP-transporter, putative
nr
ID AAZ23108.1
description plastid ATP/ADP transport protein 2 [Manihot esculenta]
swissprot
ID O24381
description Plastidic ATP/ADP-transporter OS=Solanum tuberosum PE=2 SV=2
trembl
ID Q1AK41
description Plastid ATP/ADP transport protein 2 OS=Manihot esculenta GN=AATP2 PE=2 SV=1
Gene Ontology
ID GO:0016021
description plastidic atp adp-transporter

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27117: 118518-123891
cDNA
(Sanger)
(ID:Location)		 012_O20.ab1: 118596-119228 , 042_B14.ab1: 118604-118902

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002601_130 0.0 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
2 Hb_000170_190 0.0830678505 - - PREDICTED: uncharacterized protein LOC105638988 [Jatropha curcas]
3 Hb_006663_070 0.0938302674 - - PREDICTED: uncharacterized protein LOC105637432 [Jatropha curcas]
4 Hb_002276_060 0.0994168325 - - hypothetical protein CISIN_1g002019mg [Citrus sinensis]
5 Hb_002551_070 0.1031599149 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
6 Hb_008489_020 0.1064585736 - - PREDICTED: uncharacterized protein LOC105644663 [Jatropha curcas]
7 Hb_009535_020 0.1134955473 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
8 Hb_012286_010 0.1137132247 - - PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Jatropha curcas]
9 Hb_004218_240 0.1145654891 - - PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
10 Hb_032458_010 0.1178484409 - - hypothetical protein JCGZ_21107 [Jatropha curcas]
11 Hb_002493_020 0.1183214761 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
12 Hb_000743_050 0.1201277231 - - unnamed protein product [Vitis vinifera]
13 Hb_002974_060 0.1206472243 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]
14 Hb_009543_020 0.1208462119 - - PREDICTED: carboxymethylenebutenolidase homolog [Jatropha curcas]
15 Hb_007805_010 0.1215948851 - - PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]
16 Hb_002193_010 0.1223892797 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
17 Hb_004619_050 0.1241528952 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X2 [Jatropha curcas]
18 Hb_003406_040 0.1253298972 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
19 Hb_002084_020 0.1264230052 - - hypothetical protein JCGZ_04066 [Jatropha curcas]
20 Hb_102269_010 0.1269700545 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]

Gene co-expression network

sample Hb_002601_130 Hb_002601_130 Hb_000170_190 Hb_000170_190 Hb_002601_130--Hb_000170_190 Hb_006663_070 Hb_006663_070 Hb_002601_130--Hb_006663_070 Hb_002276_060 Hb_002276_060 Hb_002601_130--Hb_002276_060 Hb_002551_070 Hb_002551_070 Hb_002601_130--Hb_002551_070 Hb_008489_020 Hb_008489_020 Hb_002601_130--Hb_008489_020 Hb_009535_020 Hb_009535_020 Hb_002601_130--Hb_009535_020 Hb_000170_190--Hb_002276_060 Hb_000300_580 Hb_000300_580 Hb_000170_190--Hb_000300_580 Hb_000010_180 Hb_000010_180 Hb_000170_190--Hb_000010_180 Hb_000170_190--Hb_008489_020 Hb_000768_190 Hb_000768_190 Hb_000170_190--Hb_000768_190 Hb_000679_150 Hb_000679_150 Hb_006663_070--Hb_000679_150 Hb_002092_090 Hb_002092_090 Hb_006663_070--Hb_002092_090 Hb_004619_050 Hb_004619_050 Hb_006663_070--Hb_004619_050 Hb_032458_010 Hb_032458_010 Hb_006663_070--Hb_032458_010 Hb_005679_050 Hb_005679_050 Hb_006663_070--Hb_005679_050 Hb_000034_040 Hb_000034_040 Hb_002276_060--Hb_000034_040 Hb_003001_150 Hb_003001_150 Hb_002276_060--Hb_003001_150 Hb_012286_010 Hb_012286_010 Hb_002276_060--Hb_012286_010 Hb_002193_010 Hb_002193_010 Hb_002276_060--Hb_002193_010 Hb_005181_110 Hb_005181_110 Hb_002276_060--Hb_005181_110 Hb_003623_030 Hb_003623_030 Hb_002551_070--Hb_003623_030 Hb_032631_040 Hb_032631_040 Hb_002551_070--Hb_032631_040 Hb_002974_060 Hb_002974_060 Hb_002551_070--Hb_002974_060 Hb_003966_030 Hb_003966_030 Hb_002551_070--Hb_003966_030 Hb_000183_020 Hb_000183_020 Hb_002551_070--Hb_000183_020 Hb_048476_180 Hb_048476_180 Hb_002551_070--Hb_048476_180 Hb_005488_060 Hb_005488_060 Hb_008489_020--Hb_005488_060 Hb_008489_020--Hb_012286_010 Hb_002084_020 Hb_002084_020 Hb_008489_020--Hb_002084_020 Hb_006915_070 Hb_006915_070 Hb_008489_020--Hb_006915_070 Hb_000600_070 Hb_000600_070 Hb_009535_020--Hb_000600_070 Hb_000023_190 Hb_000023_190 Hb_009535_020--Hb_000023_190 Hb_028487_110 Hb_028487_110 Hb_009535_020--Hb_028487_110 Hb_028639_010 Hb_028639_010 Hb_009535_020--Hb_028639_010 Hb_004218_240 Hb_004218_240 Hb_009535_020--Hb_004218_240 Hb_000567_050 Hb_000567_050 Hb_009535_020--Hb_000567_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.4274 19.1721 11.3712 15.3585 38.5143 84.2978
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.3924 11.0824 25.1689 21.1237 41.5597

CAGE analysis