Hb_002601_140

Information

Type -
Description -
Location Contig2601: 125015-127340
Sequence    

Annotation

kegg
ID rcu:RCOM_0896900
description signal transducer, putative
nr
ID XP_002517554.1
description signal transducer, putative [Ricinus communis]
swissprot
ID Q5KS50
description Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1
trembl
ID B9RUY5
description Signal transducer, putative OS=Ricinus communis GN=RCOM_0896900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27119: 125046-127299
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002601_140 0.0 - - signal transducer, putative [Ricinus communis]
2 Hb_002635_020 0.0888718226 - - hypothetical protein POPTR_0018s09790g [Populus trichocarpa]
3 Hb_000260_750 0.0918131552 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
4 Hb_002078_320 0.0937521725 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1 [Jatropha curcas]
5 Hb_000987_020 0.0957735683 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
6 Hb_000694_050 0.0996247773 - - Nuclease PA3, putative [Ricinus communis]
7 Hb_000901_010 0.1067076028 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Jatropha curcas]
8 Hb_000189_160 0.1069748163 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
9 Hb_001579_060 0.1077362711 - - carbonic anhydrase, putative [Ricinus communis]
10 Hb_020805_070 0.112800398 - - PREDICTED: MLO protein homolog 1-like [Jatropha curcas]
11 Hb_003506_010 0.1169851128 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
12 Hb_004946_010 0.1186429796 - - hypothetical protein POPTR_0013s035502g, partial [Populus trichocarpa]
13 Hb_004162_320 0.1187235089 - - PREDICTED: uncharacterized protein LOC105628009 isoform X1 [Jatropha curcas]
14 Hb_004324_320 0.1191096677 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
15 Hb_000147_020 0.1191534792 - - PREDICTED: uncharacterized protein LOC105638303 [Jatropha curcas]
16 Hb_000062_050 0.1195600428 - - protein binding protein, putative [Ricinus communis]
17 Hb_017098_050 0.1199206712 - - hypothetical protein POPTR_0001s03540g [Populus trichocarpa]
18 Hb_003224_010 0.1213428851 - - -
19 Hb_001135_010 0.121355896 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
20 Hb_002635_010 0.1219909964 - - homogentisate phytyl transferase [Hevea brasiliensis]

Gene co-expression network

sample Hb_002601_140 Hb_002601_140 Hb_002635_020 Hb_002635_020 Hb_002601_140--Hb_002635_020 Hb_000260_750 Hb_000260_750 Hb_002601_140--Hb_000260_750 Hb_002078_320 Hb_002078_320 Hb_002601_140--Hb_002078_320 Hb_000987_020 Hb_000987_020 Hb_002601_140--Hb_000987_020 Hb_000694_050 Hb_000694_050 Hb_002601_140--Hb_000694_050 Hb_000901_010 Hb_000901_010 Hb_002601_140--Hb_000901_010 Hb_000922_160 Hb_000922_160 Hb_002635_020--Hb_000922_160 Hb_002635_020--Hb_002078_320 Hb_000162_200 Hb_000162_200 Hb_002635_020--Hb_000162_200 Hb_004162_320 Hb_004162_320 Hb_002635_020--Hb_004162_320 Hb_003506_010 Hb_003506_010 Hb_002635_020--Hb_003506_010 Hb_000880_040 Hb_000880_040 Hb_000260_750--Hb_000880_040 Hb_004324_320 Hb_004324_320 Hb_000260_750--Hb_004324_320 Hb_009102_010 Hb_009102_010 Hb_000260_750--Hb_009102_010 Hb_078582_010 Hb_078582_010 Hb_000260_750--Hb_078582_010 Hb_000260_750--Hb_002078_320 Hb_002078_320--Hb_003506_010 Hb_002078_320--Hb_004162_320 Hb_002078_320--Hb_000901_010 Hb_002078_320--Hb_000987_020 Hb_000185_170 Hb_000185_170 Hb_002078_320--Hb_000185_170 Hb_020805_070 Hb_020805_070 Hb_002078_320--Hb_020805_070 Hb_001579_060 Hb_001579_060 Hb_000987_020--Hb_001579_060 Hb_000987_020--Hb_000901_010 Hb_000987_020--Hb_000185_170 Hb_000987_020--Hb_000694_050 Hb_000037_200 Hb_000037_200 Hb_000987_020--Hb_000037_200 Hb_000694_050--Hb_001579_060 Hb_001883_010 Hb_001883_010 Hb_000694_050--Hb_001883_010 Hb_002871_110 Hb_002871_110 Hb_000694_050--Hb_002871_110 Hb_000694_050--Hb_002078_320 Hb_004946_010 Hb_004946_010 Hb_000901_010--Hb_004946_010 Hb_000901_010--Hb_020805_070 Hb_004855_080 Hb_004855_080 Hb_000901_010--Hb_004855_080 Hb_000901_010--Hb_000260_750
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.740187 21.1049 59.4935 32.6749 1.06709 0.258395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.122196 0 0 35.5536 64.2087

CAGE analysis