Hb_002603_010

Information

Type -
Description -
Location Contig2603: 2-986
Sequence    

Annotation

kegg
ID -
description -
nr
ID CBI36662.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A0A0A9MUQ3
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase-like protein ccr3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002603_010 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_017559_010 0.1255716319 - - hypothetical protein JCGZ_06093 [Jatropha curcas]
3 Hb_000574_370 0.1286174455 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
4 Hb_000254_010 0.1509545146 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Jatropha curcas]
5 Hb_002943_010 0.1514356459 - - PREDICTED: wall-associated receptor kinase-like 1 [Nelumbo nucifera]
6 Hb_000473_030 0.151976524 - - hypothetical protein JCGZ_19297 [Jatropha curcas]
7 Hb_033234_010 0.1533081848 desease resistance Gene Name: LRR_8 Disease resistance protein RPP8 [Theobroma cacao]
8 Hb_001430_100 0.1555060976 - - cytochrome P450, putative [Ricinus communis]
9 Hb_073808_010 0.1581531977 desease resistance Gene Name: DUF594 ATP binding protein, putative [Ricinus communis]
10 Hb_001951_070 0.1657160591 - - putative protein [Arabidopsis thaliana]
11 Hb_000220_080 0.1704127338 - - kinase, putative [Ricinus communis]
12 Hb_000085_380 0.1708837222 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000139_510 0.1759214417 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
14 Hb_003470_050 0.176576555 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
15 Hb_001247_270 0.1812728144 - - PREDICTED: probable L-cysteine desulfhydrase, chloroplastic [Jatropha curcas]
16 Hb_042202_020 0.1814576202 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
17 Hb_002671_060 0.1825692557 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
18 Hb_000340_220 0.1831967025 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002833_020 0.1839625981 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
20 Hb_002928_020 0.1848067743 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]

Gene co-expression network

sample Hb_002603_010 Hb_002603_010 Hb_017559_010 Hb_017559_010 Hb_002603_010--Hb_017559_010 Hb_000574_370 Hb_000574_370 Hb_002603_010--Hb_000574_370 Hb_000254_010 Hb_000254_010 Hb_002603_010--Hb_000254_010 Hb_002943_010 Hb_002943_010 Hb_002603_010--Hb_002943_010 Hb_000473_030 Hb_000473_030 Hb_002603_010--Hb_000473_030 Hb_033234_010 Hb_033234_010 Hb_002603_010--Hb_033234_010 Hb_017559_010--Hb_000574_370 Hb_009193_060 Hb_009193_060 Hb_017559_010--Hb_009193_060 Hb_001619_030 Hb_001619_030 Hb_017559_010--Hb_001619_030 Hb_002093_050 Hb_002093_050 Hb_017559_010--Hb_002093_050 Hb_017559_010--Hb_000473_030 Hb_000139_510 Hb_000139_510 Hb_000574_370--Hb_000139_510 Hb_001268_300 Hb_001268_300 Hb_000574_370--Hb_001268_300 Hb_001488_280 Hb_001488_280 Hb_000574_370--Hb_001488_280 Hb_000574_370--Hb_009193_060 Hb_002833_020 Hb_002833_020 Hb_000574_370--Hb_002833_020 Hb_001048_100 Hb_001048_100 Hb_000254_010--Hb_001048_100 Hb_001189_100 Hb_001189_100 Hb_000254_010--Hb_001189_100 Hb_042202_020 Hb_042202_020 Hb_000254_010--Hb_042202_020 Hb_000254_010--Hb_033234_010 Hb_000847_020 Hb_000847_020 Hb_000254_010--Hb_000847_020 Hb_000024_130 Hb_000024_130 Hb_000254_010--Hb_000024_130 Hb_000340_220 Hb_000340_220 Hb_002943_010--Hb_000340_220 Hb_000066_040 Hb_000066_040 Hb_002943_010--Hb_000066_040 Hb_013399_090 Hb_013399_090 Hb_002943_010--Hb_013399_090 Hb_000404_040 Hb_000404_040 Hb_002943_010--Hb_000404_040 Hb_002928_020 Hb_002928_020 Hb_002943_010--Hb_002928_020 Hb_000019_170 Hb_000019_170 Hb_000473_030--Hb_000019_170 Hb_000590_070 Hb_000590_070 Hb_000473_030--Hb_000590_070 Hb_007317_020 Hb_007317_020 Hb_000473_030--Hb_007317_020 Hb_000365_200 Hb_000365_200 Hb_000473_030--Hb_000365_200 Hb_009535_030 Hb_009535_030 Hb_000473_030--Hb_009535_030 Hb_005181_060 Hb_005181_060 Hb_000473_030--Hb_005181_060 Hb_033234_010--Hb_042202_020 Hb_033234_010--Hb_002833_020 Hb_000085_380 Hb_000085_380 Hb_033234_010--Hb_000085_380 Hb_000072_020 Hb_000072_020 Hb_033234_010--Hb_000072_020 Hb_132840_030 Hb_132840_030 Hb_033234_010--Hb_132840_030 Hb_000120_310 Hb_000120_310 Hb_033234_010--Hb_000120_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.126368 0.508859 0.356358 0.587919 0.0965734 0.0443396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.156604 0.674383 0.519219

CAGE analysis