Hb_002603_120

Information

Type -
Description -
Location Contig2603: 84006-91158
Sequence    

Annotation

kegg
ID tcc:TCM_042531
description Nuclear pore complex protein-related isoform 1
nr
ID XP_012087570.1
description PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
swissprot
ID Q9FFK6
description Nuclear pore complex protein NUP88 OS=Arabidopsis thaliana GN=NUP88 PE=1 SV=1
trembl
ID A0A067LKE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01279 PE=4 SV=1
Gene Ontology
ID GO:0005643
description nuclear pore complex protein nup88

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27143: 84141-87321 , PASA_asmbl_27144: 88486-91133
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002603_120 0.0 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
2 Hb_000853_420 0.0586224463 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
3 Hb_001595_030 0.0609680654 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
4 Hb_000030_300 0.0625981164 - - Thioredoxin, putative [Ricinus communis]
5 Hb_000629_010 0.0634528382 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
6 Hb_005188_050 0.0639214163 - - PREDICTED: DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
7 Hb_004491_010 0.0660712845 - - 60S ribosomal protein L51, putative [Ricinus communis]
8 Hb_000768_040 0.066928161 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
9 Hb_004355_020 0.0682625996 - - PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Jatropha curcas]
10 Hb_001489_150 0.0685403945 - - PREDICTED: uncharacterized protein LOC105123623 isoform X2 [Populus euphratica]
11 Hb_001258_090 0.0694288737 - - PREDICTED: protein spt2-like [Jatropha curcas]
12 Hb_000096_070 0.0699624639 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
13 Hb_011671_430 0.0714815437 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
14 Hb_000421_070 0.0720113347 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_003464_060 0.0736490112 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
16 Hb_000487_290 0.07442506 - - ribonucleic acid binding protein S1, putative [Ricinus communis]
17 Hb_007054_060 0.0746849317 - - -
18 Hb_000038_170 0.0767043699 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
19 Hb_001242_060 0.0770580664 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
20 Hb_001677_210 0.0784558443 - - hypothetical protein JCGZ_01374 [Jatropha curcas]

Gene co-expression network

sample Hb_002603_120 Hb_002603_120 Hb_000853_420 Hb_000853_420 Hb_002603_120--Hb_000853_420 Hb_001595_030 Hb_001595_030 Hb_002603_120--Hb_001595_030 Hb_000030_300 Hb_000030_300 Hb_002603_120--Hb_000030_300 Hb_000629_010 Hb_000629_010 Hb_002603_120--Hb_000629_010 Hb_005188_050 Hb_005188_050 Hb_002603_120--Hb_005188_050 Hb_004491_010 Hb_004491_010 Hb_002603_120--Hb_004491_010 Hb_000853_170 Hb_000853_170 Hb_000853_420--Hb_000853_170 Hb_000853_420--Hb_004491_010 Hb_011671_430 Hb_011671_430 Hb_000853_420--Hb_011671_430 Hb_000613_090 Hb_000613_090 Hb_000853_420--Hb_000613_090 Hb_001006_140 Hb_001006_140 Hb_000853_420--Hb_001006_140 Hb_000879_200 Hb_000879_200 Hb_001595_030--Hb_000879_200 Hb_036790_100 Hb_036790_100 Hb_001595_030--Hb_036790_100 Hb_000038_170 Hb_000038_170 Hb_001595_030--Hb_000038_170 Hb_000327_120 Hb_000327_120 Hb_001595_030--Hb_000327_120 Hb_006185_050 Hb_006185_050 Hb_001595_030--Hb_006185_050 Hb_002026_180 Hb_002026_180 Hb_000030_300--Hb_002026_180 Hb_002496_030 Hb_002496_030 Hb_000030_300--Hb_002496_030 Hb_003175_010 Hb_003175_010 Hb_000030_300--Hb_003175_010 Hb_001242_060 Hb_001242_060 Hb_000030_300--Hb_001242_060 Hb_000808_270 Hb_000808_270 Hb_000030_300--Hb_000808_270 Hb_000926_280 Hb_000926_280 Hb_000030_300--Hb_000926_280 Hb_000629_010--Hb_000808_270 Hb_000629_010--Hb_000030_300 Hb_004355_020 Hb_004355_020 Hb_000629_010--Hb_004355_020 Hb_011218_040 Hb_011218_040 Hb_000629_010--Hb_011218_040 Hb_039946_020 Hb_039946_020 Hb_000629_010--Hb_039946_020 Hb_000827_070 Hb_000827_070 Hb_005188_050--Hb_000827_070 Hb_000487_290 Hb_000487_290 Hb_005188_050--Hb_000487_290 Hb_000803_190 Hb_000803_190 Hb_005188_050--Hb_000803_190 Hb_045793_010 Hb_045793_010 Hb_005188_050--Hb_045793_010 Hb_000025_360 Hb_000025_360 Hb_005188_050--Hb_000025_360 Hb_002685_170 Hb_002685_170 Hb_004491_010--Hb_002685_170 Hb_028995_040 Hb_028995_040 Hb_004491_010--Hb_028995_040 Hb_000041_270 Hb_000041_270 Hb_004491_010--Hb_000041_270 Hb_003126_080 Hb_003126_080 Hb_004491_010--Hb_003126_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.9678 18.7839 12.14 7.23201 19.1066 24.5937
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.0527 20.3426 18.8764 14.0382 8.59931

CAGE analysis