Hb_002603_130

Information

Type -
Description -
Location Contig2603: 91996-95481
Sequence    

Annotation

kegg
ID tcc:TCM_042532
description Cytochrome P450 superfamily protein isoform 1
nr
ID XP_012087583.1
description PREDICTED: cytochrome P450 90A1 [Jatropha curcas]
swissprot
ID Q42569
description Cytochrome P450 90A1 OS=Arabidopsis thaliana GN=CYP90A1 PE=2 SV=1
trembl
ID A0A067LJG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01280 PE=3 SV=1
Gene Ontology
ID GO:0004497
description cytochrome p450 90a1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002603_130 0.0 - - PREDICTED: cytochrome P450 90A1 [Jatropha curcas]
2 Hb_000032_240 0.1578352063 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006501_110 0.1632780805 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X1 [Jatropha curcas]
4 Hb_000982_070 0.1654934035 - - unnamed protein product [Vitis vinifera]
5 Hb_074197_010 0.1721429687 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
6 Hb_000207_380 0.1749721209 - - sucrose transporter 6 [Hevea brasiliensis]
7 Hb_000139_330 0.1833569362 - - short chain dehydrogenase, putative [Ricinus communis]
8 Hb_005892_060 0.1840116441 - - PREDICTED: uncharacterized protein LOC105632176 isoform X2 [Jatropha curcas]
9 Hb_002471_070 0.1898336692 - - Tartrate-resistant acid phosphatase type 5 precursor, putative [Ricinus communis]
10 Hb_068804_150 0.1925522429 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000699_110 0.1947826564 - - hypothetical protein POPTR_0013s04180g [Populus trichocarpa]
12 Hb_004787_090 0.1966416777 - - PREDICTED: HVA22-like protein a [Jatropha curcas]
13 Hb_124315_040 0.1971610347 - - hypothetical protein 19 [Hevea brasiliensis]
14 Hb_112064_020 0.1980411707 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Jatropha curcas]
15 Hb_002876_030 0.19946135 - - PREDICTED: 3-ketoacyl-CoA synthase 4 [Jatropha curcas]
16 Hb_002054_010 0.2012258729 - - PREDICTED: heptahelical transmembrane protein 1 [Jatropha curcas]
17 Hb_001035_040 0.203179309 - - unnamed protein product [Coffea canephora]
18 Hb_000481_020 0.2032510136 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
19 Hb_002301_290 0.2041444845 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
20 Hb_004724_140 0.2046790031 transcription factor TF Family: NF-YB PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]

Gene co-expression network

sample Hb_002603_130 Hb_002603_130 Hb_000032_240 Hb_000032_240 Hb_002603_130--Hb_000032_240 Hb_006501_110 Hb_006501_110 Hb_002603_130--Hb_006501_110 Hb_000982_070 Hb_000982_070 Hb_002603_130--Hb_000982_070 Hb_074197_010 Hb_074197_010 Hb_002603_130--Hb_074197_010 Hb_000207_380 Hb_000207_380 Hb_002603_130--Hb_000207_380 Hb_000139_330 Hb_000139_330 Hb_002603_130--Hb_000139_330 Hb_124315_040 Hb_124315_040 Hb_000032_240--Hb_124315_040 Hb_002876_030 Hb_002876_030 Hb_000032_240--Hb_002876_030 Hb_005396_040 Hb_005396_040 Hb_000032_240--Hb_005396_040 Hb_000373_290 Hb_000373_290 Hb_000032_240--Hb_000373_290 Hb_000548_030 Hb_000548_030 Hb_000032_240--Hb_000548_030 Hb_000481_020 Hb_000481_020 Hb_006501_110--Hb_000481_020 Hb_004787_090 Hb_004787_090 Hb_006501_110--Hb_004787_090 Hb_006501_110--Hb_000982_070 Hb_000390_200 Hb_000390_200 Hb_006501_110--Hb_000390_200 Hb_004659_120 Hb_004659_120 Hb_006501_110--Hb_004659_120 Hb_000723_090 Hb_000723_090 Hb_006501_110--Hb_000723_090 Hb_001135_080 Hb_001135_080 Hb_000982_070--Hb_001135_080 Hb_001922_190 Hb_001922_190 Hb_000982_070--Hb_001922_190 Hb_000982_070--Hb_000481_020 Hb_000907_090 Hb_000907_090 Hb_000982_070--Hb_000907_090 Hb_003126_090 Hb_003126_090 Hb_000982_070--Hb_003126_090 Hb_005892_060 Hb_005892_060 Hb_074197_010--Hb_005892_060 Hb_019033_010 Hb_019033_010 Hb_074197_010--Hb_019033_010 Hb_002301_290 Hb_002301_290 Hb_074197_010--Hb_002301_290 Hb_026428_010 Hb_026428_010 Hb_074197_010--Hb_026428_010 Hb_002471_100 Hb_002471_100 Hb_074197_010--Hb_002471_100 Hb_000207_380--Hb_000982_070 Hb_007140_020 Hb_007140_020 Hb_000207_380--Hb_007140_020 Hb_000922_170 Hb_000922_170 Hb_000207_380--Hb_000922_170 Hb_000384_130 Hb_000384_130 Hb_000207_380--Hb_000384_130 Hb_164926_020 Hb_164926_020 Hb_000207_380--Hb_164926_020 Hb_004032_440 Hb_004032_440 Hb_000139_330--Hb_004032_440 Hb_000139_330--Hb_006501_110 Hb_000139_330--Hb_002876_030 Hb_000139_330--Hb_000548_030 Hb_023988_020 Hb_023988_020 Hb_000139_330--Hb_023988_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
74.8403 2.48995 2.57539 35.9061 30.54 26.0461
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
148.653 46.409 25.8735 2.58965 19.6718

CAGE analysis