Hb_002603_150

Information

Type -
Description -
Location Contig2603: 150687-154973
Sequence    

Annotation

kegg
ID rcu:RCOM_0593170
description fad NAD binding oxidoreductases, putative
nr
ID XP_012087594.1
description PREDICTED: protein yippee-like [Jatropha curcas]
swissprot
ID P59234
description Protein yippee-like OS=Solanum tuberosum PE=2 SV=1
trembl
ID A0A067L8R8
description Protein yippee-like OS=Jatropha curcas GN=JCGZ_01282 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27146: 150851-154898 , PASA_asmbl_27147: 150844-155018 , PASA_asmbl_27148: 150837-154890 , PASA_asmbl_27149: 152522-153240 , PASA_asmbl_27150: 151110-153240 , PASA_asmbl_27151: 151338-151807 , PASA_asmbl_27152: 153942-154149 , PASA_asmbl_27154: 151110-151314
cDNA
(Sanger)
(ID:Location)		 024_N12.ab1: 150837-154726

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002603_150 0.0 - - PREDICTED: protein yippee-like [Jatropha curcas]
2 Hb_017862_010 0.0758017643 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
3 Hb_000069_100 0.0793573337 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000012_100 0.0841139733 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]
5 Hb_000069_550 0.0846964242 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
6 Hb_003053_030 0.0854952329 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
7 Hb_001687_040 0.089469839 - - actin-depolymerizing factor [Hevea brasiliensis]
8 Hb_002876_120 0.0904580371 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
9 Hb_003581_220 0.0905893674 - - unnamed protein product [Vitis vinifera]
10 Hb_002097_060 0.0915345588 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
11 Hb_001785_040 0.0922631851 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
12 Hb_007594_120 0.0926326973 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
13 Hb_032969_030 0.0950602176 - - calmodulin binding protein, putative [Ricinus communis]
14 Hb_000224_090 0.0960202994 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
15 Hb_000272_070 0.0981351089 - - snare protein YKt [Hevea brasiliensis]
16 Hb_006573_220 0.1002887633 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
17 Hb_000181_300 0.1006562552 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
18 Hb_001076_020 0.101682352 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
19 Hb_006831_030 0.1027332394 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
20 Hb_001157_010 0.1053307368 - - deoxyhypusine synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002603_150 Hb_002603_150 Hb_017862_010 Hb_017862_010 Hb_002603_150--Hb_017862_010 Hb_000069_100 Hb_000069_100 Hb_002603_150--Hb_000069_100 Hb_000012_100 Hb_000012_100 Hb_002603_150--Hb_000012_100 Hb_000069_550 Hb_000069_550 Hb_002603_150--Hb_000069_550 Hb_003053_030 Hb_003053_030 Hb_002603_150--Hb_003053_030 Hb_001687_040 Hb_001687_040 Hb_002603_150--Hb_001687_040 Hb_017862_010--Hb_000069_100 Hb_001123_120 Hb_001123_120 Hb_017862_010--Hb_001123_120 Hb_000212_260 Hb_000212_260 Hb_017862_010--Hb_000212_260 Hb_006831_030 Hb_006831_030 Hb_017862_010--Hb_006831_030 Hb_000224_090 Hb_000224_090 Hb_017862_010--Hb_000224_090 Hb_002097_060 Hb_002097_060 Hb_000069_100--Hb_002097_060 Hb_000069_100--Hb_006831_030 Hb_000329_330 Hb_000329_330 Hb_000069_100--Hb_000329_330 Hb_001616_060 Hb_001616_060 Hb_000069_100--Hb_001616_060 Hb_000069_100--Hb_000212_260 Hb_006573_220 Hb_006573_220 Hb_000069_100--Hb_006573_220 Hb_000181_300 Hb_000181_300 Hb_000012_100--Hb_000181_300 Hb_000193_120 Hb_000193_120 Hb_000012_100--Hb_000193_120 Hb_001634_040 Hb_001634_040 Hb_000012_100--Hb_001634_040 Hb_004156_040 Hb_004156_040 Hb_000012_100--Hb_004156_040 Hb_000012_100--Hb_003053_030 Hb_000012_100--Hb_006573_220 Hb_006569_100 Hb_006569_100 Hb_000069_550--Hb_006569_100 Hb_007594_120 Hb_007594_120 Hb_000069_550--Hb_007594_120 Hb_002876_120 Hb_002876_120 Hb_000069_550--Hb_002876_120 Hb_017948_010 Hb_017948_010 Hb_000069_550--Hb_017948_010 Hb_001191_090 Hb_001191_090 Hb_000069_550--Hb_001191_090 Hb_003053_030--Hb_001191_090 Hb_003053_030--Hb_000181_300 Hb_148200_010 Hb_148200_010 Hb_003053_030--Hb_148200_010 Hb_000364_030 Hb_000364_030 Hb_003053_030--Hb_000364_030 Hb_003053_030--Hb_004156_040 Hb_003994_040 Hb_003994_040 Hb_003053_030--Hb_003994_040 Hb_001687_040--Hb_006573_220 Hb_001687_040--Hb_002097_060 Hb_001687_040--Hb_001191_090 Hb_001687_040--Hb_000069_100 Hb_000272_070 Hb_000272_070 Hb_001687_040--Hb_000272_070 Hb_001687_040--Hb_003053_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
86.4278 10.7007 29.3779 52.6636 42.7381 58.255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
215.572 316.853 198.031 46.2966 46.7202

CAGE analysis