Hb_002609_010

Information

Type -
Description -
Location Contig2609: 19151-20293
Sequence    

Annotation

kegg
ID rcu:RCOM_0730430
description hypothetical protein
nr
ID XP_012068245.1
description PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LDR2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08524 PE=4 SV=1
Gene Ontology
ID GO:0003677
description homeobox prospero

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27172: 19262-20277 , PASA_asmbl_27173: 19262-20146
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002609_010 0.0 - - PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]
2 Hb_002849_080 0.0854932519 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
3 Hb_148209_020 0.0878805337 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
4 Hb_006316_070 0.0984276489 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
5 Hb_000413_170 0.1009619303 - - PREDICTED: probable histone H2A.3 [Jatropha curcas]
6 Hb_001247_230 0.1055535563 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_000265_250 0.1064452317 - - auxilin, putative [Ricinus communis]
8 Hb_010584_010 0.1072605357 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
9 Hb_000116_570 0.1142259059 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
10 Hb_000016_280 0.1162770975 - - Arginine/serine-rich splicing factor 35 [Theobroma cacao]
11 Hb_005399_020 0.117048879 - - hypothetical protein CISIN_1g022820mg [Citrus sinensis]
12 Hb_005038_020 0.1171033534 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_003349_010 0.1177353662 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10023911mg [Citrus clementina]
14 Hb_000685_080 0.1202415239 - - protein binding protein, putative [Ricinus communis]
15 Hb_003299_080 0.1219262037 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
16 Hb_002977_010 0.1225536416 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
17 Hb_012395_160 0.1238401947 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
18 Hb_011465_030 0.124522217 - - PREDICTED: B2 protein [Jatropha curcas]
19 Hb_010883_080 0.1258620422 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
20 Hb_007257_050 0.1267522431 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_002609_010 Hb_002609_010 Hb_002849_080 Hb_002849_080 Hb_002609_010--Hb_002849_080 Hb_148209_020 Hb_148209_020 Hb_002609_010--Hb_148209_020 Hb_006316_070 Hb_006316_070 Hb_002609_010--Hb_006316_070 Hb_000413_170 Hb_000413_170 Hb_002609_010--Hb_000413_170 Hb_001247_230 Hb_001247_230 Hb_002609_010--Hb_001247_230 Hb_000265_250 Hb_000265_250 Hb_002609_010--Hb_000265_250 Hb_002849_080--Hb_148209_020 Hb_002849_080--Hb_006316_070 Hb_002977_010 Hb_002977_010 Hb_002849_080--Hb_002977_010 Hb_011465_030 Hb_011465_030 Hb_002849_080--Hb_011465_030 Hb_005038_020 Hb_005038_020 Hb_002849_080--Hb_005038_020 Hb_012395_160 Hb_012395_160 Hb_148209_020--Hb_012395_160 Hb_148209_020--Hb_006316_070 Hb_002477_150 Hb_002477_150 Hb_148209_020--Hb_002477_150 Hb_148209_020--Hb_002977_010 Hb_005399_020 Hb_005399_020 Hb_148209_020--Hb_005399_020 Hb_006316_070--Hb_002977_010 Hb_002813_010 Hb_002813_010 Hb_006316_070--Hb_002813_010 Hb_006316_070--Hb_002477_150 Hb_001584_170 Hb_001584_170 Hb_006316_070--Hb_001584_170 Hb_001907_060 Hb_001907_060 Hb_000413_170--Hb_001907_060 Hb_007348_030 Hb_007348_030 Hb_000413_170--Hb_007348_030 Hb_004225_130 Hb_004225_130 Hb_000413_170--Hb_004225_130 Hb_000413_170--Hb_148209_020 Hb_010883_080 Hb_010883_080 Hb_000413_170--Hb_010883_080 Hb_001999_250 Hb_001999_250 Hb_001247_230--Hb_001999_250 Hb_001247_230--Hb_002849_080 Hb_001247_230--Hb_148209_020 Hb_001247_230--Hb_000265_250 Hb_000116_570 Hb_000116_570 Hb_001247_230--Hb_000116_570 Hb_000265_250--Hb_011465_030 Hb_000265_250--Hb_002477_150 Hb_000265_250--Hb_148209_020 Hb_009028_030 Hb_009028_030 Hb_000265_250--Hb_009028_030 Hb_000265_250--Hb_002849_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
109.439 141.942 22.6748 23.0548 139.823 149.448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.2282 31.9682 21.4116 24.6838 9.45941

CAGE analysis