Hb_002609_030

Information

Type -
Description -
Location Contig2609: 29339-33663
Sequence    

Annotation

kegg
ID rcu:RCOM_0730390
description laccase, putative (EC:1.10.3.3)
nr
ID XP_002520425.1
description laccase, putative [Ricinus communis]
swissprot
ID O80434
description Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV=2
trembl
ID B9S356
description Laccase OS=Ricinus communis GN=RCOM_0730390 PE=3 SV=1
Gene Ontology
ID GO:0048046
description laccase-4 -like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27177: 32513-32656 , PASA_asmbl_27178: 32884-33623
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002609_030 0.0 - - laccase, putative [Ricinus communis]
2 Hb_003746_040 0.1461272425 - - PREDICTED: protein N-terminal glutamine amidohydrolase [Jatropha curcas]
3 Hb_004206_010 0.1481408163 - - PREDICTED: uncharacterized protein LOC103321196 [Prunus mume]
4 Hb_043302_010 0.1482564596 - - ADP,ATP carrier protein, putative [Ricinus communis]
5 Hb_000933_050 0.1489714894 - - protein binding protein, putative [Ricinus communis]
6 Hb_005529_010 0.1510130736 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000997_020 0.1535836295 - - PREDICTED: uncharacterized protein LOC105629694 [Jatropha curcas]
8 Hb_003086_070 0.153985479 - - PREDICTED: iron-sulfur cluster co-chaperone protein HscB, mitochondrial [Jatropha curcas]
9 Hb_000072_140 0.1549156275 - - -
10 Hb_004884_220 0.1562004111 - - hypothetical protein 29 [Hevea brasiliensis]
11 Hb_000175_490 0.1576748846 - - PREDICTED: probable polygalacturonase At1g80170 isoform X1 [Jatropha curcas]
12 Hb_003126_040 0.1598449343 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000329_690 0.1611798078 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
14 Hb_001629_110 0.1636854128 - - PREDICTED: uncharacterized protein LOC105632808 [Jatropha curcas]
15 Hb_002276_190 0.1640653251 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
16 Hb_003050_200 0.1643842731 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
17 Hb_004032_050 0.1649465139 - - hypothetical protein CISIN_1g014592mg [Citrus sinensis]
18 Hb_006261_040 0.1651316286 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
19 Hb_001741_140 0.1652377209 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
20 Hb_001427_170 0.1658448207 - - PREDICTED: 40S ribosomal protein S15a-5-like [Populus euphratica]

Gene co-expression network

sample Hb_002609_030 Hb_002609_030 Hb_003746_040 Hb_003746_040 Hb_002609_030--Hb_003746_040 Hb_004206_010 Hb_004206_010 Hb_002609_030--Hb_004206_010 Hb_043302_010 Hb_043302_010 Hb_002609_030--Hb_043302_010 Hb_000933_050 Hb_000933_050 Hb_002609_030--Hb_000933_050 Hb_005529_010 Hb_005529_010 Hb_002609_030--Hb_005529_010 Hb_000997_020 Hb_000997_020 Hb_002609_030--Hb_000997_020 Hb_001047_100 Hb_001047_100 Hb_003746_040--Hb_001047_100 Hb_011828_050 Hb_011828_050 Hb_003746_040--Hb_011828_050 Hb_003746_040--Hb_043302_010 Hb_010128_130 Hb_010128_130 Hb_003746_040--Hb_010128_130 Hb_105386_010 Hb_105386_010 Hb_003746_040--Hb_105386_010 Hb_000290_020 Hb_000290_020 Hb_003746_040--Hb_000290_020 Hb_000165_030 Hb_000165_030 Hb_004206_010--Hb_000165_030 Hb_003609_040 Hb_003609_040 Hb_004206_010--Hb_003609_040 Hb_000107_390 Hb_000107_390 Hb_004206_010--Hb_000107_390 Hb_000172_370 Hb_000172_370 Hb_004206_010--Hb_000172_370 Hb_002997_170 Hb_002997_170 Hb_004206_010--Hb_002997_170 Hb_000417_180 Hb_000417_180 Hb_004206_010--Hb_000417_180 Hb_043302_010--Hb_011828_050 Hb_009767_120 Hb_009767_120 Hb_043302_010--Hb_009767_120 Hb_000690_080 Hb_000690_080 Hb_043302_010--Hb_000690_080 Hb_004204_200 Hb_004204_200 Hb_043302_010--Hb_004204_200 Hb_004944_010 Hb_004944_010 Hb_043302_010--Hb_004944_010 Hb_000098_190 Hb_000098_190 Hb_000933_050--Hb_000098_190 Hb_004032_060 Hb_004032_060 Hb_000933_050--Hb_004032_060 Hb_000714_030 Hb_000714_030 Hb_000933_050--Hb_000714_030 Hb_001951_260 Hb_001951_260 Hb_000933_050--Hb_001951_260 Hb_000670_020 Hb_000670_020 Hb_000933_050--Hb_000670_020 Hb_000001_110 Hb_000001_110 Hb_000933_050--Hb_000001_110 Hb_033080_010 Hb_033080_010 Hb_005529_010--Hb_033080_010 Hb_001198_090 Hb_001198_090 Hb_005529_010--Hb_001198_090 Hb_005529_010--Hb_000001_110 Hb_005529_010--Hb_000933_050 Hb_005333_040 Hb_005333_040 Hb_005529_010--Hb_005333_040 Hb_000307_170 Hb_000307_170 Hb_005529_010--Hb_000307_170 Hb_001741_140 Hb_001741_140 Hb_000997_020--Hb_001741_140 Hb_000997_020--Hb_002997_170 Hb_000905_190 Hb_000905_190 Hb_000997_020--Hb_000905_190 Hb_143629_010 Hb_143629_010 Hb_000997_020--Hb_143629_010 Hb_005928_060 Hb_005928_060 Hb_000997_020--Hb_005928_060 Hb_003453_020 Hb_003453_020 Hb_000997_020--Hb_003453_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.54544 0.286019 1.45769 1.63323 5.5357 3.20222
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.36858 4.40338 1.60118 0.352153 0.810963

CAGE analysis