Hb_002609_100

Information

Type -
Description -
Location Contig2609: 82446-83847
Sequence    

Annotation

kegg
ID pop:POPTR_0009s04790g
description POPTRDRAFT_821496; C2 domain-containing family protein
nr
ID XP_011035190.1
description PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A9PBN8
description C2 domain-containing family protein OS=Populus trichocarpa GN=POPTR_0009s04790g PE=2 SV=1
Gene Ontology
ID GO:0005515
description c2 domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27186: 82410-83515
cDNA
(Sanger)
(ID:Location)		 016_G23.ab1: 82410-83135 , 038_M05.ab1: 82410-83180

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002609_100 0.0 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
2 Hb_012150_070 0.12053347 - - hypothetical protein JCGZ_04984 [Jatropha curcas]
3 Hb_002026_230 0.12812447 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
4 Hb_007382_040 0.1285988975 - - uncharacterized LOC105644857 [Jatropha curcas]
5 Hb_000613_020 0.1563146297 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
6 Hb_030414_050 0.1576243425 - - -
7 Hb_003050_090 0.1607679487 - - lupus la ribonucleoprotein, putative [Ricinus communis]
8 Hb_060437_010 0.1633331551 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
9 Hb_001259_030 0.163597668 - - PREDICTED: uncharacterized protein LOC105641270 [Jatropha curcas]
10 Hb_000018_160 0.1675590088 - - nitrate transporter, putative [Ricinus communis]
11 Hb_000753_210 0.1748959875 - - l-asparaginase, putative [Ricinus communis]
12 Hb_000836_050 0.1799514207 - - -
13 Hb_001178_060 0.1820279793 - - PREDICTED: protein BUD31 homolog 2 isoform X1 [Jatropha curcas]
14 Hb_000590_080 0.1831891088 - - PREDICTED: metal tolerance protein 11 [Jatropha curcas]
15 Hb_007634_020 0.1860928145 - - -
16 Hb_007809_060 0.1927931673 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
17 Hb_005568_070 0.1934841824 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
18 Hb_004206_040 0.1969251623 - - cytochrome P450, putative [Ricinus communis]
19 Hb_012760_200 0.1982691023 - - protein phsophatase-2a, putative [Ricinus communis]
20 Hb_002897_040 0.1983395988 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]

Gene co-expression network

sample Hb_002609_100 Hb_002609_100 Hb_012150_070 Hb_012150_070 Hb_002609_100--Hb_012150_070 Hb_002026_230 Hb_002026_230 Hb_002609_100--Hb_002026_230 Hb_007382_040 Hb_007382_040 Hb_002609_100--Hb_007382_040 Hb_000613_020 Hb_000613_020 Hb_002609_100--Hb_000613_020 Hb_030414_050 Hb_030414_050 Hb_002609_100--Hb_030414_050 Hb_003050_090 Hb_003050_090 Hb_002609_100--Hb_003050_090 Hb_012150_070--Hb_002026_230 Hb_000018_160 Hb_000018_160 Hb_012150_070--Hb_000018_160 Hb_005568_070 Hb_005568_070 Hb_012150_070--Hb_005568_070 Hb_000580_060 Hb_000580_060 Hb_012150_070--Hb_000580_060 Hb_004307_040 Hb_004307_040 Hb_012150_070--Hb_004307_040 Hb_000836_050 Hb_000836_050 Hb_002026_230--Hb_000836_050 Hb_007634_020 Hb_007634_020 Hb_002026_230--Hb_007634_020 Hb_002026_230--Hb_005568_070 Hb_002026_230--Hb_000018_160 Hb_001259_030 Hb_001259_030 Hb_007382_040--Hb_001259_030 Hb_007382_040--Hb_003050_090 Hb_007382_040--Hb_000613_020 Hb_060437_010 Hb_060437_010 Hb_007382_040--Hb_060437_010 Hb_004254_040 Hb_004254_040 Hb_007382_040--Hb_004254_040 Hb_000025_750 Hb_000025_750 Hb_000613_020--Hb_000025_750 Hb_000613_020--Hb_001259_030 Hb_000613_020--Hb_060437_010 Hb_004032_460 Hb_004032_460 Hb_000613_020--Hb_004032_460 Hb_005028_010 Hb_005028_010 Hb_000613_020--Hb_005028_010 Hb_001348_140 Hb_001348_140 Hb_000613_020--Hb_001348_140 Hb_030414_050--Hb_060437_010 Hb_030414_050--Hb_003050_090 Hb_000692_170 Hb_000692_170 Hb_030414_050--Hb_000692_170 Hb_002192_070 Hb_002192_070 Hb_030414_050--Hb_002192_070 Hb_007416_200 Hb_007416_200 Hb_030414_050--Hb_007416_200 Hb_000093_130 Hb_000093_130 Hb_030414_050--Hb_000093_130 Hb_003050_090--Hb_060437_010 Hb_001140_080 Hb_001140_080 Hb_003050_090--Hb_001140_080 Hb_001034_020 Hb_001034_020 Hb_003050_090--Hb_001034_020 Hb_001178_060 Hb_001178_060 Hb_003050_090--Hb_001178_060 Hb_000953_140 Hb_000953_140 Hb_003050_090--Hb_000953_140 Hb_003050_090--Hb_001259_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2463.38 701.881 19.4951 13.4189 1643.16 1215.81
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
380.343 122.399 155.799 64.8984 6.33111

CAGE analysis