Hb_002609_110

Information

Type -
Description -
Location Contig2609: 85434-86328
Sequence    

Annotation

kegg
ID rcu:RCOM_0611500
description Josephin-2, putative
nr
ID KDP46525.1
description hypothetical protein JCGZ_08497 [Jatropha curcas]
swissprot
ID O82391
description Josephin-like protein OS=Arabidopsis thaliana GN=At2g29640 PE=2 SV=1
trembl
ID A0A067LNS8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08497 PE=4 SV=1
Gene Ontology
ID GO:0008242
description josephin-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27187: 85417-86339
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002609_110 0.0 - - hypothetical protein JCGZ_08497 [Jatropha curcas]
2 Hb_000057_040 0.0571085624 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_001252_080 0.0605246603 - - PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]
4 Hb_002149_020 0.0611575311 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
5 Hb_004195_160 0.0644644231 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
6 Hb_182026_020 0.066950905 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
7 Hb_000418_100 0.0735496117 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
8 Hb_000943_070 0.0752492915 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
9 Hb_007426_230 0.0756713997 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
10 Hb_002811_360 0.0758180325 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
11 Hb_003097_150 0.0763186462 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
12 Hb_003195_060 0.0767691455 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
13 Hb_003005_020 0.0779121705 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
14 Hb_004600_040 0.080863147 - - -
15 Hb_001030_120 0.081193339 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
16 Hb_168000_010 0.0814173501 - - Calcium-dependent lipid-binding family protein isoform 2 [Theobroma cacao]
17 Hb_000172_370 0.0825785893 - - -
18 Hb_000384_090 0.0840283971 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
19 Hb_000815_210 0.0840387321 - - uncoupling protein 3, partial [Manihot esculenta]
20 Hb_003642_060 0.0849561327 - - hypothetical protein RCOM_1189860 [Ricinus communis]

Gene co-expression network

sample Hb_002609_110 Hb_002609_110 Hb_000057_040 Hb_000057_040 Hb_002609_110--Hb_000057_040 Hb_001252_080 Hb_001252_080 Hb_002609_110--Hb_001252_080 Hb_002149_020 Hb_002149_020 Hb_002609_110--Hb_002149_020 Hb_004195_160 Hb_004195_160 Hb_002609_110--Hb_004195_160 Hb_182026_020 Hb_182026_020 Hb_002609_110--Hb_182026_020 Hb_000418_100 Hb_000418_100 Hb_002609_110--Hb_000418_100 Hb_168707_030 Hb_168707_030 Hb_000057_040--Hb_168707_030 Hb_168000_010 Hb_168000_010 Hb_000057_040--Hb_168000_010 Hb_003642_060 Hb_003642_060 Hb_000057_040--Hb_003642_060 Hb_000057_040--Hb_004195_160 Hb_000057_040--Hb_001252_080 Hb_000358_150 Hb_000358_150 Hb_001252_080--Hb_000358_150 Hb_000676_110 Hb_000676_110 Hb_001252_080--Hb_000676_110 Hb_001369_420 Hb_001369_420 Hb_001252_080--Hb_001369_420 Hb_000207_390 Hb_000207_390 Hb_001252_080--Hb_000207_390 Hb_066182_010 Hb_066182_010 Hb_002149_020--Hb_066182_010 Hb_004440_090 Hb_004440_090 Hb_002149_020--Hb_004440_090 Hb_002391_300 Hb_002391_300 Hb_002149_020--Hb_002391_300 Hb_000300_060 Hb_000300_060 Hb_002149_020--Hb_000300_060 Hb_003005_020 Hb_003005_020 Hb_002149_020--Hb_003005_020 Hb_007426_230 Hb_007426_230 Hb_004195_160--Hb_007426_230 Hb_000398_180 Hb_000398_180 Hb_004195_160--Hb_000398_180 Hb_001030_120 Hb_001030_120 Hb_004195_160--Hb_001030_120 Hb_001377_290 Hb_001377_290 Hb_004195_160--Hb_001377_290 Hb_006332_020 Hb_006332_020 Hb_004195_160--Hb_006332_020 Hb_182026_020--Hb_000418_100 Hb_011918_080 Hb_011918_080 Hb_182026_020--Hb_011918_080 Hb_000556_080 Hb_000556_080 Hb_182026_020--Hb_000556_080 Hb_002686_270 Hb_002686_270 Hb_182026_020--Hb_002686_270 Hb_010638_020 Hb_010638_020 Hb_182026_020--Hb_010638_020 Hb_001720_050 Hb_001720_050 Hb_000418_100--Hb_001720_050 Hb_000062_240 Hb_000062_240 Hb_000418_100--Hb_000062_240 Hb_000418_100--Hb_001030_120 Hb_082609_020 Hb_082609_020 Hb_000418_100--Hb_082609_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4494 5.55434 3.29668 7.31821 20.1428 20.2096
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7348 14.6767 14.8187 7.36342 3.89439

CAGE analysis