Hb_002609_150

Information

Type transcription factor
Description TF Family: C2H2
Location Contig2609: 123704-124843
Sequence    

Annotation

kegg
ID rcu:RCOM_0611540
description hypothetical protein
nr
ID XP_002525610.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SHZ1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0611540 PE=4 SV=1
Gene Ontology
ID GO:0003950
description zinc finger family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002609_150 0.0 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
2 Hb_001879_050 0.1194577355 - - Disease resistance protein RFL1, putative [Ricinus communis]
3 Hb_001148_040 0.1256465979 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
4 Hb_000007_160 0.1268496723 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
5 Hb_000532_130 0.1285156989 - - hypothetical protein [Anabaena sp. PCC 7108]
6 Hb_000172_010 0.1307416146 - - PREDICTED: uncharacterized protein DDB_G0271670-like isoform X1 [Populus euphratica]
7 Hb_002739_060 0.1364549671 - - -
8 Hb_001408_150 0.146563119 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
9 Hb_008175_030 0.1471027848 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
10 Hb_000579_220 0.1483892832 - - transcription factor, putative [Ricinus communis]
11 Hb_000657_030 0.1491596816 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
12 Hb_003556_070 0.1495376265 - - metal ion binding protein, putative [Ricinus communis]
13 Hb_002783_300 0.1511635927 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
14 Hb_009581_040 0.1517129378 - - hypothetical protein B456_011G052100 [Gossypium raimondii]
15 Hb_017604_020 0.1525461044 - - hypothetical protein JCGZ_22673 [Jatropha curcas]
16 Hb_001608_030 0.1535234509 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]
17 Hb_000778_020 0.1569253425 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
18 Hb_008406_020 0.1596733021 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
19 Hb_001073_060 0.1602749574 - - phosphate transporter 1 [Hevea brasiliensis]
20 Hb_000343_260 0.1606955277 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]

Gene co-expression network

sample Hb_002609_150 Hb_002609_150 Hb_001879_050 Hb_001879_050 Hb_002609_150--Hb_001879_050 Hb_001148_040 Hb_001148_040 Hb_002609_150--Hb_001148_040 Hb_000007_160 Hb_000007_160 Hb_002609_150--Hb_000007_160 Hb_000532_130 Hb_000532_130 Hb_002609_150--Hb_000532_130 Hb_000172_010 Hb_000172_010 Hb_002609_150--Hb_000172_010 Hb_002739_060 Hb_002739_060 Hb_002609_150--Hb_002739_060 Hb_001879_050--Hb_000172_010 Hb_000984_100 Hb_000984_100 Hb_001879_050--Hb_000984_100 Hb_002571_010 Hb_002571_010 Hb_001879_050--Hb_002571_010 Hb_001879_050--Hb_001148_040 Hb_000579_220 Hb_000579_220 Hb_001879_050--Hb_000579_220 Hb_001148_040--Hb_000007_160 Hb_140848_010 Hb_140848_010 Hb_001148_040--Hb_140848_010 Hb_010381_110 Hb_010381_110 Hb_001148_040--Hb_010381_110 Hb_008406_020 Hb_008406_020 Hb_001148_040--Hb_008406_020 Hb_000778_020 Hb_000778_020 Hb_001148_040--Hb_000778_020 Hb_001699_050 Hb_001699_050 Hb_000007_160--Hb_001699_050 Hb_001195_500 Hb_001195_500 Hb_000007_160--Hb_001195_500 Hb_008175_030 Hb_008175_030 Hb_000007_160--Hb_008175_030 Hb_000007_160--Hb_000778_020 Hb_000532_130--Hb_002739_060 Hb_007253_040 Hb_007253_040 Hb_000532_130--Hb_007253_040 Hb_000532_130--Hb_008175_030 Hb_001408_150 Hb_001408_150 Hb_000532_130--Hb_001408_150 Hb_060909_010 Hb_060909_010 Hb_000532_130--Hb_060909_010 Hb_000172_010--Hb_000579_220 Hb_006615_190 Hb_006615_190 Hb_000172_010--Hb_006615_190 Hb_007237_090 Hb_007237_090 Hb_000172_010--Hb_007237_090 Hb_000072_160 Hb_000072_160 Hb_000172_010--Hb_000072_160 Hb_084127_010 Hb_084127_010 Hb_000172_010--Hb_084127_010 Hb_002739_060--Hb_008175_030 Hb_002739_060--Hb_000778_020 Hb_002739_060--Hb_001408_150 Hb_005880_010 Hb_005880_010 Hb_002739_060--Hb_005880_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.8972 167.06 16.9904 45.562 3.58242 4.09338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.086304 0 1.76319 73.4426 18.6302

CAGE analysis