Hb_002609_160

Information

Type -
Description -
Location Contig2609: 126731-129783
Sequence    

Annotation

kegg
ID rcu:RCOM_0611560
description GDP-mannose transporter, putative
nr
ID XP_012067891.1
description PREDICTED: GDP-mannose transporter GONST2 [Jatropha curcas]
swissprot
ID Q84L09
description GDP-mannose transporter GONST2 OS=Arabidopsis thaliana GN=GONST2 PE=2 SV=1
trembl
ID A0A067LPQ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08491 PE=4 SV=1
Gene Ontology
ID GO:0016021
description gdp-mannose transporter gonst2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002609_160 0.0 - - PREDICTED: GDP-mannose transporter GONST2 [Jatropha curcas]
2 Hb_000923_090 0.1246574184 - - -
3 Hb_000030_200 0.1296808646 - - PREDICTED: early nodulin-93-like [Populus euphratica]
4 Hb_006915_040 0.1345173279 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
5 Hb_150930_010 0.135778178 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005307_050 0.1388928966 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
7 Hb_000087_130 0.140752134 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
8 Hb_008695_050 0.1410086968 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000390_140 0.1435037102 - - PREDICTED: putative gamma-glutamylcyclotransferase At3g02910 [Jatropha curcas]
10 Hb_000230_240 0.144884859 - - tRNA/rRNA methyltransferase family protein [Populus trichocarpa]
11 Hb_001410_060 0.1461511718 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
12 Hb_027684_020 0.146312062 - - ribosomal protein S10 (mitochondrion) [Nicotiana tabacum]
13 Hb_000896_040 0.1467237633 - - BnaC02g13240D [Brassica napus]
14 Hb_010560_030 0.1468002711 - - PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]
15 Hb_003291_020 0.1476127821 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
16 Hb_003126_070 0.1487891711 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
17 Hb_148209_010 0.1493647191 - - RAS-related GTP-binding family protein [Populus trichocarpa]
18 Hb_001353_010 0.1495124587 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
19 Hb_001053_140 0.1500183505 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
20 Hb_072922_020 0.1508633436 - - SNARE-like superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_002609_160 Hb_002609_160 Hb_000923_090 Hb_000923_090 Hb_002609_160--Hb_000923_090 Hb_000030_200 Hb_000030_200 Hb_002609_160--Hb_000030_200 Hb_006915_040 Hb_006915_040 Hb_002609_160--Hb_006915_040 Hb_150930_010 Hb_150930_010 Hb_002609_160--Hb_150930_010 Hb_005307_050 Hb_005307_050 Hb_002609_160--Hb_005307_050 Hb_000087_130 Hb_000087_130 Hb_002609_160--Hb_000087_130 Hb_000390_140 Hb_000390_140 Hb_000923_090--Hb_000390_140 Hb_004162_210 Hb_004162_210 Hb_000923_090--Hb_004162_210 Hb_008695_050 Hb_008695_050 Hb_000923_090--Hb_008695_050 Hb_004800_060 Hb_004800_060 Hb_000923_090--Hb_004800_060 Hb_007894_060 Hb_007894_060 Hb_000923_090--Hb_007894_060 Hb_000030_200--Hb_000087_130 Hb_072922_020 Hb_072922_020 Hb_000030_200--Hb_072922_020 Hb_000948_220 Hb_000948_220 Hb_000030_200--Hb_000948_220 Hb_000384_120 Hb_000384_120 Hb_000030_200--Hb_000384_120 Hb_001155_040 Hb_001155_040 Hb_000030_200--Hb_001155_040 Hb_010560_030 Hb_010560_030 Hb_000030_200--Hb_010560_030 Hb_006915_040--Hb_000087_130 Hb_000189_240 Hb_000189_240 Hb_006915_040--Hb_000189_240 Hb_002000_140 Hb_002000_140 Hb_006915_040--Hb_002000_140 Hb_179296_010 Hb_179296_010 Hb_006915_040--Hb_179296_010 Hb_174865_010 Hb_174865_010 Hb_006915_040--Hb_174865_010 Hb_003376_190 Hb_003376_190 Hb_006915_040--Hb_003376_190 Hb_000612_040 Hb_000612_040 Hb_150930_010--Hb_000612_040 Hb_000317_070 Hb_000317_070 Hb_150930_010--Hb_000317_070 Hb_000356_090 Hb_000356_090 Hb_150930_010--Hb_000356_090 Hb_150930_010--Hb_010560_030 Hb_150930_010--Hb_000087_130 Hb_000808_190 Hb_000808_190 Hb_005307_050--Hb_000808_190 Hb_007928_030 Hb_007928_030 Hb_005307_050--Hb_007928_030 Hb_186982_040 Hb_186982_040 Hb_005307_050--Hb_186982_040 Hb_000212_290 Hb_000212_290 Hb_005307_050--Hb_000212_290 Hb_005307_050--Hb_008695_050 Hb_001242_140 Hb_001242_140 Hb_005307_050--Hb_001242_140 Hb_000087_130--Hb_001155_040 Hb_000087_130--Hb_072922_020 Hb_000087_130--Hb_000948_220 Hb_000087_130--Hb_000384_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.477355 0.147083 0.299266 0.982082 0.0475496 0.333661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.04615 1.41893 0.424348 0.680915 0.413255

CAGE analysis