Hb_002609_200

Information

Type -
Description -
Location Contig2609: 157343-160544
Sequence    

Annotation

kegg
ID rcu:RCOM_0611770
description anthranilate synthase component I, putative (EC:4.1.3.27)
nr
ID XP_012067835.1
description PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID P32069
description Anthranilate synthase alpha subunit 2, chloroplastic OS=Arabidopsis thaliana GN=ASA2 PE=2 SV=1
trembl
ID A0A067LPQ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08486 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27204: 158672-160444 , PASA_asmbl_27205: 158672-159530
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002609_200 0.0 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_007827_010 0.071871941 - - PREDICTED: uncharacterized protein C12B10.15c [Jatropha curcas]
3 Hb_000566_120 0.0722892259 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
4 Hb_001279_080 0.0768182496 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
5 Hb_000431_070 0.0855930671 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
6 Hb_011457_050 0.0887046352 - - PREDICTED: TP53-regulating kinase [Jatropha curcas]
7 Hb_001353_010 0.0898435089 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
8 Hb_087749_010 0.0913102386 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
9 Hb_045003_010 0.0916299116 - - Stomatin-1, putative [Ricinus communis]
10 Hb_001728_060 0.0919823691 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
11 Hb_000045_310 0.0921683 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
12 Hb_000403_070 0.0921883165 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_000107_150 0.0933614414 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
14 Hb_000347_240 0.0937061897 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
15 Hb_001329_150 0.0943957976 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
16 Hb_007928_030 0.0960106906 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
17 Hb_000840_180 0.0977125163 - - protein BOLA2 [Jatropha curcas]
18 Hb_000212_290 0.0979358475 - - PREDICTED: protein TIC 20-II, chloroplastic [Jatropha curcas]
19 Hb_008071_020 0.0998981449 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
20 Hb_001931_010 0.1005599109 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_002609_200 Hb_002609_200 Hb_007827_010 Hb_007827_010 Hb_002609_200--Hb_007827_010 Hb_000566_120 Hb_000566_120 Hb_002609_200--Hb_000566_120 Hb_001279_080 Hb_001279_080 Hb_002609_200--Hb_001279_080 Hb_000431_070 Hb_000431_070 Hb_002609_200--Hb_000431_070 Hb_011457_050 Hb_011457_050 Hb_002609_200--Hb_011457_050 Hb_001353_010 Hb_001353_010 Hb_002609_200--Hb_001353_010 Hb_007827_010--Hb_001279_080 Hb_002872_050 Hb_002872_050 Hb_007827_010--Hb_002872_050 Hb_000107_150 Hb_000107_150 Hb_007827_010--Hb_000107_150 Hb_007827_010--Hb_000431_070 Hb_000035_270 Hb_000035_270 Hb_007827_010--Hb_000035_270 Hb_000045_310 Hb_000045_310 Hb_000566_120--Hb_000045_310 Hb_006573_190 Hb_006573_190 Hb_000566_120--Hb_006573_190 Hb_001931_010 Hb_001931_010 Hb_000566_120--Hb_001931_010 Hb_012799_170 Hb_012799_170 Hb_000566_120--Hb_012799_170 Hb_010361_010 Hb_010361_010 Hb_000566_120--Hb_010361_010 Hb_000390_300 Hb_000390_300 Hb_000566_120--Hb_000390_300 Hb_008071_020 Hb_008071_020 Hb_001279_080--Hb_008071_020 Hb_001279_080--Hb_001931_010 Hb_018133_020 Hb_018133_020 Hb_001279_080--Hb_018133_020 Hb_001279_080--Hb_000431_070 Hb_001279_080--Hb_000045_310 Hb_001279_080--Hb_000566_120 Hb_007576_170 Hb_007576_170 Hb_000431_070--Hb_007576_170 Hb_002613_020 Hb_002613_020 Hb_000431_070--Hb_002613_020 Hb_000431_070--Hb_000045_310 Hb_002000_140 Hb_002000_140 Hb_000431_070--Hb_002000_140 Hb_087749_010 Hb_087749_010 Hb_000431_070--Hb_087749_010 Hb_004324_270 Hb_004324_270 Hb_011457_050--Hb_004324_270 Hb_002408_020 Hb_002408_020 Hb_011457_050--Hb_002408_020 Hb_003768_030 Hb_003768_030 Hb_011457_050--Hb_003768_030 Hb_000061_210 Hb_000061_210 Hb_011457_050--Hb_000061_210 Hb_011457_050--Hb_000566_120 Hb_002183_060 Hb_002183_060 Hb_011457_050--Hb_002183_060 Hb_045003_010 Hb_045003_010 Hb_001353_010--Hb_045003_010 Hb_001489_110 Hb_001489_110 Hb_001353_010--Hb_001489_110 Hb_000808_190 Hb_000808_190 Hb_001353_010--Hb_000808_190 Hb_002303_060 Hb_002303_060 Hb_001353_010--Hb_002303_060 Hb_000563_200 Hb_000563_200 Hb_001353_010--Hb_000563_200 Hb_025098_010 Hb_025098_010 Hb_001353_010--Hb_025098_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.521103 0.363761 0.7421 1.22694 0.602035 0.567136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.21274 2.06609 0.86256 0.729027 1.27629

CAGE analysis