Hb_002609_210

Information

Type -
Description -
Location Contig2609: 162348-165526
Sequence    

Annotation

kegg
ID pop:POPTR_0009s04910g
description POPTRDRAFT_650148; Pleckstrin homology domain-containing protein 1
nr
ID XP_012067805.1
description PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
swissprot
ID Q9ST43
description Pleckstrin homology domain-containing protein 1 OS=Arabidopsis thaliana GN=PH1 PE=2 SV=2
trembl
ID A0A067LDM7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08484 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27207: 161782-164688 , PASA_asmbl_27208: 162271-162676
cDNA
(Sanger)
(ID:Location)		 006_C02.ab1: 165087-165803 , 028_O17.ab1: 165046-165674

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002609_210 0.0 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
2 Hb_009711_020 0.0582238432 - - PREDICTED: uncharacterized protein LOC105647794 isoform X2 [Jatropha curcas]
3 Hb_005211_190 0.0777940881 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
4 Hb_000030_290 0.0847131614 - - PREDICTED: uncharacterized protein LOC100247068 [Vitis vinifera]
5 Hb_009421_040 0.0940357508 - - PREDICTED: eukaryotic initiation factor 4A [Jatropha curcas]
6 Hb_000680_140 0.1006575964 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
7 Hb_000334_210 0.1054865059 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
8 Hb_001616_040 0.105559389 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
9 Hb_002477_140 0.1057830848 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1 [Jatropha curcas]
10 Hb_029584_060 0.1071742779 - - Grave disease carrier protein, putative [Ricinus communis]
11 Hb_001424_020 0.1074108247 - - PREDICTED: AP-1 complex subunit sigma-2 isoform X2 [Solanum lycopersicum]
12 Hb_000221_150 0.1100166551 - - -
13 Hb_033153_060 0.1103566606 - - Transcription elongation factor, putative [Ricinus communis]
14 Hb_001304_140 0.1105320253 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
15 Hb_007416_020 0.1109905614 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]
16 Hb_003581_100 0.1110077242 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
17 Hb_021056_020 0.1122730621 - - plasma membrane H+-ATPase [Hevea brasiliensis]
18 Hb_006541_010 0.1126037959 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
19 Hb_004459_040 0.1129592553 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
20 Hb_010582_010 0.1144424162 - - hypothetical protein POPTR_0011s15670g [Populus trichocarpa]

Gene co-expression network

sample Hb_002609_210 Hb_002609_210 Hb_009711_020 Hb_009711_020 Hb_002609_210--Hb_009711_020 Hb_005211_190 Hb_005211_190 Hb_002609_210--Hb_005211_190 Hb_000030_290 Hb_000030_290 Hb_002609_210--Hb_000030_290 Hb_009421_040 Hb_009421_040 Hb_002609_210--Hb_009421_040 Hb_000680_140 Hb_000680_140 Hb_002609_210--Hb_000680_140 Hb_000334_210 Hb_000334_210 Hb_002609_210--Hb_000334_210 Hb_009711_020--Hb_000030_290 Hb_001616_040 Hb_001616_040 Hb_009711_020--Hb_001616_040 Hb_009711_020--Hb_000334_210 Hb_002477_140 Hb_002477_140 Hb_009711_020--Hb_002477_140 Hb_004871_020 Hb_004871_020 Hb_009711_020--Hb_004871_020 Hb_000365_080 Hb_000365_080 Hb_005211_190--Hb_000365_080 Hb_001424_020 Hb_001424_020 Hb_005211_190--Hb_001424_020 Hb_002107_120 Hb_002107_120 Hb_005211_190--Hb_002107_120 Hb_005211_190--Hb_009421_040 Hb_005211_190--Hb_000680_140 Hb_000030_290--Hb_001616_040 Hb_153544_010 Hb_153544_010 Hb_000030_290--Hb_153544_010 Hb_000030_290--Hb_000334_210 Hb_000331_470 Hb_000331_470 Hb_000030_290--Hb_000331_470 Hb_005357_130 Hb_005357_130 Hb_009421_040--Hb_005357_130 Hb_002687_170 Hb_002687_170 Hb_009421_040--Hb_002687_170 Hb_000086_550 Hb_000086_550 Hb_009421_040--Hb_000086_550 Hb_001117_090 Hb_001117_090 Hb_009421_040--Hb_001117_090 Hb_003623_050 Hb_003623_050 Hb_009421_040--Hb_003623_050 Hb_004459_040 Hb_004459_040 Hb_000680_140--Hb_004459_040 Hb_153112_030 Hb_153112_030 Hb_000680_140--Hb_153112_030 Hb_007576_170 Hb_007576_170 Hb_000680_140--Hb_007576_170 Hb_006541_010 Hb_006541_010 Hb_000680_140--Hb_006541_010 Hb_000680_140--Hb_001616_040 Hb_000668_040 Hb_000668_040 Hb_000680_140--Hb_000668_040 Hb_000111_340 Hb_000111_340 Hb_000334_210--Hb_000111_340 Hb_003656_070 Hb_003656_070 Hb_000334_210--Hb_003656_070 Hb_001047_230 Hb_001047_230 Hb_000334_210--Hb_001047_230 Hb_003683_110 Hb_003683_110 Hb_000334_210--Hb_003683_110 Hb_000334_210--Hb_001616_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.2732 17.7285 28.0332 21.1191 26.6933 39.3602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
116.865 103.554 39.4042 25.1743 31.2516

CAGE analysis