Hb_002609_250

Information

Type -
Description -
Location Contig2609: 174999-176529
Sequence    

Annotation

kegg
ID pop:POPTR_0009s04940g
description POPTRDRAFT_768085; hypothetical protein
nr
ID XP_012067768.1
description PREDICTED: starch-binding domain-containing protein 1-like [Jatropha curcas]
swissprot
ID P36914
description Glucoamylase OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=glaA PE=2 SV=2
trembl
ID A0A067LPP6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08481 PE=4 SV=1
Gene Ontology
ID GO:0003824
description pentatricopeptide repeat-containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002609_250 0.0 - - PREDICTED: starch-binding domain-containing protein 1-like [Jatropha curcas]
2 Hb_011540_030 0.2476703164 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX5-like isoform X6 [Glycine max]
3 Hb_000028_260 0.2491305272 - - hypothetical protein glysoja_041948 [Glycine soja]
4 Hb_001247_030 0.2593477391 - - -
5 Hb_000345_070 0.2831699732 rubber biosynthesis Gene Name: SRPP6 -
6 Hb_000532_090 0.2923205469 - - ATPase [delta proteobacterium MLMS-1]
7 Hb_011316_140 0.2950673053 - - PREDICTED: uncharacterized protein LOC105129591 [Populus euphratica]
8 Hb_066778_010 0.2994062787 - - -
9 Hb_000157_050 0.3025091554 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008185_020 0.3068796914 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
11 Hb_007810_090 0.3141517696 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
12 Hb_054865_160 0.3180898239 - - PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
13 Hb_004125_070 0.3192249267 - - Glycolipid transfer protein, putative [Ricinus communis]
14 Hb_000483_400 0.3199451717 - - PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Jatropha curcas]
15 Hb_011671_350 0.3200167649 - - PREDICTED: uncharacterized protein LOC105648659 [Jatropha curcas]
16 Hb_000649_340 0.3218253739 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
17 Hb_007382_130 0.3273810985 - - glycerophosphodiester phosphodiesterase, putative [Ricinus communis]
18 Hb_000350_040 0.3280276867 - - -
19 Hb_000062_200 0.3305844454 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
20 Hb_188313_010 0.3308902373 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]

Gene co-expression network

sample Hb_002609_250 Hb_002609_250 Hb_011540_030 Hb_011540_030 Hb_002609_250--Hb_011540_030 Hb_000028_260 Hb_000028_260 Hb_002609_250--Hb_000028_260 Hb_001247_030 Hb_001247_030 Hb_002609_250--Hb_001247_030 Hb_000345_070 Hb_000345_070 Hb_002609_250--Hb_000345_070 Hb_000532_090 Hb_000532_090 Hb_002609_250--Hb_000532_090 Hb_011316_140 Hb_011316_140 Hb_002609_250--Hb_011316_140 Hb_001247_190 Hb_001247_190 Hb_011540_030--Hb_001247_190 Hb_011081_040 Hb_011081_040 Hb_011540_030--Hb_011081_040 Hb_011512_050 Hb_011512_050 Hb_011540_030--Hb_011512_050 Hb_000240_120 Hb_000240_120 Hb_011540_030--Hb_000240_120 Hb_011540_030--Hb_000028_260 Hb_000028_260--Hb_001247_030 Hb_004125_070 Hb_004125_070 Hb_000028_260--Hb_004125_070 Hb_000649_340 Hb_000649_340 Hb_000028_260--Hb_000649_340 Hb_000483_400 Hb_000483_400 Hb_000028_260--Hb_000483_400 Hb_000157_050 Hb_000157_050 Hb_000028_260--Hb_000157_050 Hb_000796_020 Hb_000796_020 Hb_000028_260--Hb_000796_020 Hb_188313_010 Hb_188313_010 Hb_001247_030--Hb_188313_010 Hb_001247_030--Hb_004125_070 Hb_008185_020 Hb_008185_020 Hb_001247_030--Hb_008185_020 Hb_184541_010 Hb_184541_010 Hb_001247_030--Hb_184541_010 Hb_004079_050 Hb_004079_050 Hb_001247_030--Hb_004079_050 Hb_000345_070--Hb_000532_090 Hb_000100_060 Hb_000100_060 Hb_000345_070--Hb_000100_060 Hb_148209_030 Hb_148209_030 Hb_000345_070--Hb_148209_030 Hb_004785_050 Hb_004785_050 Hb_000345_070--Hb_004785_050 Hb_001621_120 Hb_001621_120 Hb_000345_070--Hb_001621_120 Hb_005914_220 Hb_005914_220 Hb_000532_090--Hb_005914_220 Hb_000302_110 Hb_000302_110 Hb_000532_090--Hb_000302_110 Hb_004925_030 Hb_004925_030 Hb_000532_090--Hb_004925_030 Hb_017862_040 Hb_017862_040 Hb_000532_090--Hb_017862_040 Hb_001741_110 Hb_001741_110 Hb_000532_090--Hb_001741_110 Hb_009111_060 Hb_009111_060 Hb_000532_090--Hb_009111_060 Hb_119808_020 Hb_119808_020 Hb_011316_140--Hb_119808_020 Hb_001541_220 Hb_001541_220 Hb_011316_140--Hb_001541_220 Hb_146902_010 Hb_146902_010 Hb_011316_140--Hb_146902_010 Hb_013654_030 Hb_013654_030 Hb_011316_140--Hb_013654_030 Hb_000281_050 Hb_000281_050 Hb_011316_140--Hb_000281_050 Hb_000350_040 Hb_000350_040 Hb_011316_140--Hb_000350_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0355509 0.329244 2.00796 0.0788385 0.281235
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.382579 0.402909 0 0

CAGE analysis