Hb_002609_260

Information

Type -
Description -
Location Contig2609: 177876-181562
Sequence    

Annotation

kegg
ID pop:POPTR_0009s04950g
description POPTRDRAFT_723083; hypothetical protein
nr
ID AIU41589.1
description CCCH-type zinc finger protein [Hevea brasiliensis]
swissprot
ID Q10B98
description Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa subsp. japonica GN=Os03g0826400 PE=2 SV=1
trembl
ID A0A097P9K2
description CCCH-type zinc finger protein OS=Hevea brasiliensis GN=CZF1 PE=2 SV=1
Gene Ontology
ID GO:0000166
description zinc finger ccch domain-containing protein 25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27212: 177592-181908
cDNA
(Sanger)
(ID:Location)		 005_A01.ab1: 178238-181598 , 012_N21.ab1: 178331-181598 , 017_C20.ab1: 180585-181571 , 021_L06.ab1: 180604-181908 , 038_K12.ab1: 178231-181598 , 041_D11.ab1: 178281-181598 , 045_C23.ab1: 180599-181908

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002609_260 0.0 - - CCCH-type zinc finger protein [Hevea brasiliensis]
2 Hb_000264_190 0.0485605845 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
3 Hb_010931_100 0.0592978232 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
4 Hb_005730_020 0.0604603607 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
5 Hb_005488_100 0.0745497109 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
6 Hb_027751_020 0.0754757696 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
7 Hb_000563_540 0.0825580844 - - PREDICTED: Fanconi anemia group I protein [Jatropha curcas]
8 Hb_003001_030 0.0832808668 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
9 Hb_000249_110 0.0842215447 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
10 Hb_009510_030 0.0856447682 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
11 Hb_002232_180 0.0861075404 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
12 Hb_004545_150 0.0889480407 - - PREDICTED: paramyosin [Jatropha curcas]
13 Hb_114684_020 0.0910719454 - - beta-1,3-glucanase [Hevea brasiliensis]
14 Hb_003906_120 0.0956282779 - - -
15 Hb_004738_090 0.0970425196 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002890_220 0.0998913178 - - hypothetical protein JCGZ_24899 [Jatropha curcas]
17 Hb_011457_100 0.100145631 - - ATP binding protein, putative [Ricinus communis]
18 Hb_007178_010 0.1001508449 - - pseudo-hevein [Hevea brasiliensis]
19 Hb_000571_070 0.1010214692 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
20 Hb_026048_090 0.1018360263 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002609_260 Hb_002609_260 Hb_000264_190 Hb_000264_190 Hb_002609_260--Hb_000264_190 Hb_010931_100 Hb_010931_100 Hb_002609_260--Hb_010931_100 Hb_005730_020 Hb_005730_020 Hb_002609_260--Hb_005730_020 Hb_005488_100 Hb_005488_100 Hb_002609_260--Hb_005488_100 Hb_027751_020 Hb_027751_020 Hb_002609_260--Hb_027751_020 Hb_000563_540 Hb_000563_540 Hb_002609_260--Hb_000563_540 Hb_000264_190--Hb_010931_100 Hb_000264_190--Hb_000563_540 Hb_000264_190--Hb_005730_020 Hb_009510_030 Hb_009510_030 Hb_000264_190--Hb_009510_030 Hb_002890_220 Hb_002890_220 Hb_000264_190--Hb_002890_220 Hb_004545_150 Hb_004545_150 Hb_010931_100--Hb_004545_150 Hb_010931_100--Hb_000563_540 Hb_010931_100--Hb_005488_100 Hb_010931_100--Hb_027751_020 Hb_005730_020--Hb_009510_030 Hb_003001_030 Hb_003001_030 Hb_005730_020--Hb_003001_030 Hb_005730_020--Hb_010931_100 Hb_005730_020--Hb_000563_540 Hb_002067_160 Hb_002067_160 Hb_005488_100--Hb_002067_160 Hb_007178_010 Hb_007178_010 Hb_005488_100--Hb_007178_010 Hb_005488_100--Hb_000264_190 Hb_002232_180 Hb_002232_180 Hb_005488_100--Hb_002232_180 Hb_000249_110 Hb_000249_110 Hb_027751_020--Hb_000249_110 Hb_000571_070 Hb_000571_070 Hb_027751_020--Hb_000571_070 Hb_027751_020--Hb_000563_540 Hb_027751_020--Hb_000264_190 Hb_000563_540--Hb_000571_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1258.88 48.2448 14.7572 30.6987 1025.22 938.806
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
842.017 568.07 970.689 111.649 27.8772

CAGE analysis