Hb_002609_290

Information

Type -
Description -
Location Contig2609: 225246-228356
Sequence    

Annotation

kegg
ID rcu:RCOM_0612060
description hydrolase, acting on ester bonds, putative
nr
ID XP_012067697.1
description PREDICTED: non-specific phospholipase C1 [Jatropha curcas]
swissprot
ID Q8L7Y9
description Non-specific phospholipase C1 OS=Arabidopsis thaliana GN=NPC1 PE=2 SV=1
trembl
ID B9SI13
description Hydrolase, acting on ester bonds, putative OS=Ricinus communis GN=RCOM_0612060 PE=4 SV=1
Gene Ontology
ID GO:0016788
description non-specific phospholipase c1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27218: 220589-224584 , PASA_asmbl_27219: 225181-228356 , PASA_asmbl_27220: 227618-227901
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002609_290 0.0 - - PREDICTED: non-specific phospholipase C1 [Jatropha curcas]
2 Hb_011381_070 0.0919609304 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
3 Hb_000366_050 0.0930373113 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
4 Hb_001158_120 0.099867162 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
5 Hb_010812_060 0.1075337932 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
6 Hb_002997_110 0.115671889 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 22 isoform X1 [Jatropha curcas]
7 Hb_001627_010 0.1252907977 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
8 Hb_002014_050 0.1269638531 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 isoform X2 [Populus euphratica]
9 Hb_007483_080 0.1270777826 - - hypothetical protein RCOM_0634810 [Ricinus communis]
10 Hb_054232_020 0.1308521984 - - Potassium channel SKOR, putative [Ricinus communis]
11 Hb_132840_020 0.1328655683 - - PREDICTED: protein LHY [Jatropha curcas]
12 Hb_000567_330 0.1329656384 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
13 Hb_089305_010 0.1355229248 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
14 Hb_000007_440 0.1366968146 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
15 Hb_001863_340 0.1369939523 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
16 Hb_001989_070 0.1370752072 - - PREDICTED: uncharacterized calcium-binding protein At1g02270 [Jatropha curcas]
17 Hb_001366_390 0.1372355072 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
18 Hb_002849_180 0.1376269164 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
19 Hb_000329_790 0.1378393052 - - PREDICTED: uncharacterized protein LOC105643367 [Jatropha curcas]
20 Hb_001294_040 0.1400250958 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]

Gene co-expression network

sample Hb_002609_290 Hb_002609_290 Hb_011381_070 Hb_011381_070 Hb_002609_290--Hb_011381_070 Hb_000366_050 Hb_000366_050 Hb_002609_290--Hb_000366_050 Hb_001158_120 Hb_001158_120 Hb_002609_290--Hb_001158_120 Hb_010812_060 Hb_010812_060 Hb_002609_290--Hb_010812_060 Hb_002997_110 Hb_002997_110 Hb_002609_290--Hb_002997_110 Hb_001627_010 Hb_001627_010 Hb_002609_290--Hb_001627_010 Hb_011381_070--Hb_000366_050 Hb_011381_070--Hb_001158_120 Hb_000035_490 Hb_000035_490 Hb_011381_070--Hb_000035_490 Hb_001294_040 Hb_001294_040 Hb_011381_070--Hb_001294_040 Hb_132840_020 Hb_132840_020 Hb_011381_070--Hb_132840_020 Hb_000366_050--Hb_001158_120 Hb_005539_100 Hb_005539_100 Hb_000366_050--Hb_005539_100 Hb_000329_790 Hb_000329_790 Hb_000366_050--Hb_000329_790 Hb_000366_050--Hb_001294_040 Hb_001158_120--Hb_001294_040 Hb_001158_120--Hb_005539_100 Hb_007483_080 Hb_007483_080 Hb_001158_120--Hb_007483_080 Hb_001366_390 Hb_001366_390 Hb_010812_060--Hb_001366_390 Hb_000071_090 Hb_000071_090 Hb_010812_060--Hb_000071_090 Hb_007130_020 Hb_007130_020 Hb_010812_060--Hb_007130_020 Hb_089305_010 Hb_089305_010 Hb_010812_060--Hb_089305_010 Hb_001254_020 Hb_001254_020 Hb_010812_060--Hb_001254_020 Hb_001863_340 Hb_001863_340 Hb_002997_110--Hb_001863_340 Hb_002997_110--Hb_011381_070 Hb_007224_010 Hb_007224_010 Hb_002997_110--Hb_007224_010 Hb_001386_020 Hb_001386_020 Hb_002997_110--Hb_001386_020 Hb_002997_110--Hb_000035_490 Hb_002014_050 Hb_002014_050 Hb_001627_010--Hb_002014_050 Hb_001627_010--Hb_007224_010 Hb_001627_010--Hb_132840_020 Hb_001294_050 Hb_001294_050 Hb_001627_010--Hb_001294_050 Hb_001519_060 Hb_001519_060 Hb_001627_010--Hb_001519_060 Hb_000111_390 Hb_000111_390 Hb_001627_010--Hb_000111_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.0255 85.4953 119.888 65.9449 7.87782 3.60484
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.01876 1.39369 0.965342 21.5815 61.8457

CAGE analysis