Hb_002611_010

Information

Type -
Description -
Location Contig2611: 18529-19818
Sequence    

Annotation

kegg
ID rcu:RCOM_0600380
description amino acid transporter, putative
nr
ID XP_002527144.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID F4ILY9
description Amino acid transporter ANTL1 OS=Arabidopsis thaliana GN=At2g42005 PE=2 SV=1
trembl
ID B9SMC5
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_0600380 PE=4 SV=1
Gene Ontology
ID GO:0005886
description amino acid transporter family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002611_010 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_003517_070 0.0880553937 - - PREDICTED: protein transport protein Sec24-like At3g07100 [Jatropha curcas]
3 Hb_000613_070 0.0915517793 - - -
4 Hb_001080_300 0.0966792428 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
5 Hb_138585_080 0.099289463 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
6 Hb_009674_050 0.1046362967 - - Endosomal P24A protein precursor, putative [Ricinus communis]
7 Hb_030959_010 0.104849352 - - cullin, putative [Ricinus communis]
8 Hb_007313_040 0.1071762429 - - hypothetical protein JCGZ_23401 [Jatropha curcas]
9 Hb_000803_320 0.1071859584 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
10 Hb_002025_030 0.1081003996 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
11 Hb_000946_110 0.1095944146 - - GTP cyclohydrolase I, putative [Ricinus communis]
12 Hb_000392_160 0.1102462728 - - PREDICTED: probable methyltransferase PMT2 isoform X1 [Jatropha curcas]
13 Hb_001473_170 0.1139088767 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
14 Hb_010390_010 0.1139422329 - - casein kinase, putative [Ricinus communis]
15 Hb_001627_040 0.1148446077 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 isoform X1 [Jatropha curcas]
16 Hb_001029_040 0.1157839471 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
17 Hb_002400_060 0.1177228592 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
18 Hb_004917_010 0.1186365817 - - PREDICTED: U-box domain-containing protein 13-like [Jatropha curcas]
19 Hb_009711_050 0.1197219064 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
20 Hb_000309_050 0.1197294597 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002611_010 Hb_002611_010 Hb_003517_070 Hb_003517_070 Hb_002611_010--Hb_003517_070 Hb_000613_070 Hb_000613_070 Hb_002611_010--Hb_000613_070 Hb_001080_300 Hb_001080_300 Hb_002611_010--Hb_001080_300 Hb_138585_080 Hb_138585_080 Hb_002611_010--Hb_138585_080 Hb_009674_050 Hb_009674_050 Hb_002611_010--Hb_009674_050 Hb_030959_010 Hb_030959_010 Hb_002611_010--Hb_030959_010 Hb_003340_010 Hb_003340_010 Hb_003517_070--Hb_003340_010 Hb_004917_010 Hb_004917_010 Hb_003517_070--Hb_004917_010 Hb_001975_150 Hb_001975_150 Hb_003517_070--Hb_001975_150 Hb_000392_160 Hb_000392_160 Hb_003517_070--Hb_000392_160 Hb_000803_320 Hb_000803_320 Hb_003517_070--Hb_000803_320 Hb_003517_070--Hb_001080_300 Hb_001999_210 Hb_001999_210 Hb_000613_070--Hb_001999_210 Hb_000309_050 Hb_000309_050 Hb_000613_070--Hb_000309_050 Hb_000613_070--Hb_001080_300 Hb_000613_070--Hb_000803_320 Hb_003106_190 Hb_003106_190 Hb_000613_070--Hb_003106_190 Hb_004957_030 Hb_004957_030 Hb_001080_300--Hb_004957_030 Hb_000185_220 Hb_000185_220 Hb_001080_300--Hb_000185_220 Hb_001627_040 Hb_001627_040 Hb_001080_300--Hb_001627_040 Hb_000417_390 Hb_000417_390 Hb_001080_300--Hb_000417_390 Hb_001029_040 Hb_001029_040 Hb_001080_300--Hb_001029_040 Hb_001080_300--Hb_001975_150 Hb_009296_080 Hb_009296_080 Hb_138585_080--Hb_009296_080 Hb_138585_080--Hb_001029_040 Hb_000504_180 Hb_000504_180 Hb_138585_080--Hb_000504_180 Hb_001946_180 Hb_001946_180 Hb_138585_080--Hb_001946_180 Hb_002874_110 Hb_002874_110 Hb_138585_080--Hb_002874_110 Hb_000465_280 Hb_000465_280 Hb_138585_080--Hb_000465_280 Hb_003746_010 Hb_003746_010 Hb_009674_050--Hb_003746_010 Hb_002400_060 Hb_002400_060 Hb_009674_050--Hb_002400_060 Hb_005348_110 Hb_005348_110 Hb_009674_050--Hb_005348_110 Hb_009252_010 Hb_009252_010 Hb_009674_050--Hb_009252_010 Hb_009674_050--Hb_030959_010 Hb_005116_140 Hb_005116_140 Hb_009674_050--Hb_005116_140 Hb_030959_010--Hb_005116_140 Hb_000120_860 Hb_000120_860 Hb_030959_010--Hb_000120_860 Hb_030959_010--Hb_009252_010 Hb_000417_170 Hb_000417_170 Hb_030959_010--Hb_000417_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.39508 8.3151 4.31639 19.381 3.44064 4.29641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.84504 5.27163 6.83428 10.6742 21.2956

CAGE analysis