Hb_002611_020

Information

Type -
Description -
Location Contig2611: 20165-30963
Sequence    

Annotation

kegg
ID rcu:RCOM_0600390
description alpha-1,3-mannosyl-glycoprotein beta-1, 2-n-acetylglucosaminyltransferase, putative (EC:2.4.1.101)
nr
ID XP_011000878.1
description PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9SMC6
description Alpha-1,3-mannosyl-glycoprotein beta-1, 2-n-acetylglucosaminyltransferase, putative OS=Ricinus communis GN=RCOM_0600390 PE=4 SV=1
Gene Ontology
ID GO:0005768
description alpha- -mannosyl-glycoprotein 2-beta-n-acetylglucosaminyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27330: 18153-19947 , PASA_asmbl_27331: 20332-75922 , PASA_asmbl_27333: 29202-29610 , PASA_asmbl_27334: 26119-26988
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002611_020 0.0 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]
2 Hb_000230_180 0.0856289799 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
3 Hb_181328_010 0.0959651651 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_002400_330 0.1014616403 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
5 Hb_002122_010 0.1070380862 - - -
6 Hb_005170_010 0.1126585717 - - -
7 Hb_000696_010 0.1154767543 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]
8 Hb_075764_010 0.1172121812 - - PREDICTED: PRA1 family protein A1-like [Jatropha curcas]
9 Hb_001191_110 0.1176567831 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
10 Hb_050912_010 0.1285720298 - - PREDICTED: amidase 1-like isoform X2 [Jatropha curcas]
11 Hb_009529_040 0.13185872 - - PREDICTED: transmembrane protein 120 homolog isoform X1 [Malus domestica]
12 Hb_004040_030 0.1319105975 - - PREDICTED: probable inactive purple acid phosphatase 28 isoform X2 [Jatropha curcas]
13 Hb_000035_330 0.13269598 - - Transmembrane protein 85 [Theobroma cacao]
14 Hb_165402_010 0.1334163105 - - PREDICTED: cullin-1 isoform X3 [Nicotiana sylvestris]
15 Hb_143629_130 0.1337448387 - - unnamed protein product [Coffea canephora]
16 Hb_004659_020 0.1343831234 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
17 Hb_000107_080 0.1354792838 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
18 Hb_000130_180 0.1379479161 - - PREDICTED: GPI inositol-deacylase-like isoform X2 [Jatropha curcas]
19 Hb_007026_040 0.1389892028 - - PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]
20 Hb_010003_010 0.1400204449 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002611_020 Hb_002611_020 Hb_000230_180 Hb_000230_180 Hb_002611_020--Hb_000230_180 Hb_181328_010 Hb_181328_010 Hb_002611_020--Hb_181328_010 Hb_002400_330 Hb_002400_330 Hb_002611_020--Hb_002400_330 Hb_002122_010 Hb_002122_010 Hb_002611_020--Hb_002122_010 Hb_005170_010 Hb_005170_010 Hb_002611_020--Hb_005170_010 Hb_000696_010 Hb_000696_010 Hb_002611_020--Hb_000696_010 Hb_000230_180--Hb_005170_010 Hb_075764_010 Hb_075764_010 Hb_000230_180--Hb_075764_010 Hb_086639_080 Hb_086639_080 Hb_000230_180--Hb_086639_080 Hb_002498_050 Hb_002498_050 Hb_000230_180--Hb_002498_050 Hb_000230_180--Hb_000696_010 Hb_013358_090 Hb_013358_090 Hb_181328_010--Hb_013358_090 Hb_181328_010--Hb_002400_330 Hb_106415_010 Hb_106415_010 Hb_181328_010--Hb_106415_010 Hb_086765_010 Hb_086765_010 Hb_181328_010--Hb_086765_010 Hb_050912_010 Hb_050912_010 Hb_181328_010--Hb_050912_010 Hb_008484_010 Hb_008484_010 Hb_002400_330--Hb_008484_010 Hb_041828_010 Hb_041828_010 Hb_002400_330--Hb_041828_010 Hb_002400_330--Hb_050912_010 Hb_149225_010 Hb_149225_010 Hb_002400_330--Hb_149225_010 Hb_004659_020 Hb_004659_020 Hb_002400_330--Hb_004659_020 Hb_002122_010--Hb_000230_180 Hb_002122_010--Hb_075764_010 Hb_001191_110 Hb_001191_110 Hb_002122_010--Hb_001191_110 Hb_002122_010--Hb_000696_010 Hb_010003_010 Hb_010003_010 Hb_002122_010--Hb_010003_010 Hb_000077_290 Hb_000077_290 Hb_005170_010--Hb_000077_290 Hb_000035_330 Hb_000035_330 Hb_005170_010--Hb_000035_330 Hb_005170_010--Hb_086639_080 Hb_002226_080 Hb_002226_080 Hb_005170_010--Hb_002226_080 Hb_000696_010--Hb_001191_110 Hb_003671_010 Hb_003671_010 Hb_000696_010--Hb_003671_010 Hb_000146_040 Hb_000146_040 Hb_000696_010--Hb_000146_040 Hb_002375_040 Hb_002375_040 Hb_000696_010--Hb_002375_040 Hb_005797_010 Hb_005797_010 Hb_000696_010--Hb_005797_010 Hb_033286_010 Hb_033286_010 Hb_000696_010--Hb_033286_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.60799 4.88878 6.96534 21.3811 8.74494 18.7435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.31452 3.58362 4.64186 11.9037 6.7747

CAGE analysis