Hb_002612_010

Information

Type -
Description -
Location Contig2612: 8929-15532
Sequence    

Annotation

kegg
ID pxb:103935615
description general transcription factor 3C polypeptide 5-like
nr
ID KDP29556.1
description hypothetical protein JCGZ_19269 [Jatropha curcas]
swissprot
ID Q9Y5Q8
description General transcription factor 3C polypeptide 5 OS=Homo sapiens GN=GTF3C5 PE=1 SV=2
trembl
ID A0A067K003
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19269 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27335: 12305-15242 , PASA_asmbl_27336: 15252-15484
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002612_010 0.0 - - hypothetical protein JCGZ_19269 [Jatropha curcas]
2 Hb_006829_090 0.0897947274 - - PREDICTED: protein MOS2 [Jatropha curcas]
3 Hb_004920_060 0.0900542401 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
4 Hb_033594_020 0.0921706795 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
5 Hb_000685_080 0.0928332682 - - protein binding protein, putative [Ricinus communis]
6 Hb_008246_030 0.0951928715 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
7 Hb_001473_080 0.0960241835 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
8 Hb_008725_130 0.0963762352 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
9 Hb_000120_510 0.096552555 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
10 Hb_078477_040 0.0974835666 - - nuclear movement protein nudc, putative [Ricinus communis]
11 Hb_001489_070 0.0985830452 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
12 Hb_005462_020 0.1019036849 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
13 Hb_004899_030 0.1030555645 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
14 Hb_002805_170 0.1036781899 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
15 Hb_002675_040 0.1047317598 - - ran-binding protein, putative [Ricinus communis]
16 Hb_001396_290 0.1053326621 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
17 Hb_000313_340 0.1053746939 - - DNA repair protein xp-E, putative [Ricinus communis]
18 Hb_006588_050 0.1067305258 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
19 Hb_002301_270 0.1073833975 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
20 Hb_006002_030 0.1078916584 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002612_010 Hb_002612_010 Hb_006829_090 Hb_006829_090 Hb_002612_010--Hb_006829_090 Hb_004920_060 Hb_004920_060 Hb_002612_010--Hb_004920_060 Hb_033594_020 Hb_033594_020 Hb_002612_010--Hb_033594_020 Hb_000685_080 Hb_000685_080 Hb_002612_010--Hb_000685_080 Hb_008246_030 Hb_008246_030 Hb_002612_010--Hb_008246_030 Hb_001473_080 Hb_001473_080 Hb_002612_010--Hb_001473_080 Hb_078477_040 Hb_078477_040 Hb_006829_090--Hb_078477_040 Hb_006002_030 Hb_006002_030 Hb_006829_090--Hb_006002_030 Hb_000120_510 Hb_000120_510 Hb_006829_090--Hb_000120_510 Hb_001396_290 Hb_001396_290 Hb_006829_090--Hb_001396_290 Hb_002133_030 Hb_002133_030 Hb_006829_090--Hb_002133_030 Hb_005462_020 Hb_005462_020 Hb_006829_090--Hb_005462_020 Hb_004920_060--Hb_078477_040 Hb_001731_020 Hb_001731_020 Hb_004920_060--Hb_001731_020 Hb_001489_070 Hb_001489_070 Hb_004920_060--Hb_001489_070 Hb_008725_130 Hb_008725_130 Hb_004920_060--Hb_008725_130 Hb_004920_060--Hb_008246_030 Hb_004376_030 Hb_004376_030 Hb_004920_060--Hb_004376_030 Hb_002675_040 Hb_002675_040 Hb_033594_020--Hb_002675_040 Hb_046615_020 Hb_046615_020 Hb_033594_020--Hb_046615_020 Hb_000343_210 Hb_000343_210 Hb_033594_020--Hb_000343_210 Hb_007885_070 Hb_007885_070 Hb_033594_020--Hb_007885_070 Hb_003656_160 Hb_003656_160 Hb_033594_020--Hb_003656_160 Hb_017895_020 Hb_017895_020 Hb_033594_020--Hb_017895_020 Hb_003125_060 Hb_003125_060 Hb_000685_080--Hb_003125_060 Hb_009646_050 Hb_009646_050 Hb_000685_080--Hb_009646_050 Hb_005399_020 Hb_005399_020 Hb_000685_080--Hb_005399_020 Hb_000016_280 Hb_000016_280 Hb_000685_080--Hb_000016_280 Hb_002977_010 Hb_002977_010 Hb_000685_080--Hb_002977_010 Hb_000685_080--Hb_002133_030 Hb_000363_380 Hb_000363_380 Hb_008246_030--Hb_000363_380 Hb_002301_270 Hb_002301_270 Hb_008246_030--Hb_002301_270 Hb_012404_070 Hb_012404_070 Hb_008246_030--Hb_012404_070 Hb_008246_030--Hb_017895_020 Hb_001922_130 Hb_001922_130 Hb_001473_080--Hb_001922_130 Hb_001946_240 Hb_001946_240 Hb_001473_080--Hb_001946_240 Hb_001473_080--Hb_003125_060 Hb_000120_570 Hb_000120_570 Hb_001473_080--Hb_000120_570 Hb_010883_080 Hb_010883_080 Hb_001473_080--Hb_010883_080 Hb_001473_080--Hb_002675_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.0393 19.5524 14.6416 3.93625 36.1822 34.7415
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.98984 4.55248 6.74694 7.92393 6.42097

CAGE analysis