Hb_002613_020

Information

Type -
Description -
Location Contig2613: 17933-21600
Sequence    

Annotation

kegg
ID rcu:RCOM_1682170
description ADP-ribose pyrophosphatase, putative
nr
ID XP_002509654.1
description ADP-ribose pyrophosphatase, putative [Ricinus communis]
swissprot
ID Q9SZ63
description Nudix hydrolase 14, chloroplastic OS=Arabidopsis thaliana GN=NUDT14 PE=1 SV=2
trembl
ID B9RBX0
description ADP-ribose pyrophosphatase, putative OS=Ricinus communis GN=RCOM_1682170 PE=4 SV=1
Gene Ontology
ID GO:0016787
description nudix hydrolase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27338: 18072-21233 , PASA_asmbl_27339: 20720-21056 , PASA_asmbl_27340: 21240-21653
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002613_020 0.0 - - ADP-ribose pyrophosphatase, putative [Ricinus communis]
2 Hb_000431_070 0.0653916884 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
3 Hb_007065_010 0.0728026619 - - hypothetical protein Csa_3G379730 [Cucumis sativus]
4 Hb_087749_010 0.0780650843 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
5 Hb_000016_080 0.0842745619 - - PREDICTED: uncharacterized protein LOC105648533 [Jatropha curcas]
6 Hb_007576_170 0.0863959915 - - conserved hypothetical protein [Ricinus communis]
7 Hb_033153_060 0.0913177445 - - Transcription elongation factor, putative [Ricinus communis]
8 Hb_002798_020 0.0946461812 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
9 Hb_027459_020 0.0949954608 - - phosphoglycerate mutase, putative [Ricinus communis]
10 Hb_000735_090 0.095256669 - - PREDICTED: 40S ribosomal protein S8-like [Gossypium raimondii]
11 Hb_024650_070 0.0954898583 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A-like [Jatropha curcas]
12 Hb_000789_230 0.0955961741 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
13 Hb_000085_350 0.0962973906 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
14 Hb_002872_050 0.0963902423 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]
15 Hb_001728_060 0.0991461598 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
16 Hb_002000_140 0.1000173947 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
17 Hb_001242_140 0.1004072607 - - mitochondrial carrier protein, putative [Ricinus communis]
18 Hb_000107_150 0.1005748367 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
19 Hb_005307_050 0.101615405 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
20 Hb_027654_050 0.1018061502 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]

Gene co-expression network

sample Hb_002613_020 Hb_002613_020 Hb_000431_070 Hb_000431_070 Hb_002613_020--Hb_000431_070 Hb_007065_010 Hb_007065_010 Hb_002613_020--Hb_007065_010 Hb_087749_010 Hb_087749_010 Hb_002613_020--Hb_087749_010 Hb_000016_080 Hb_000016_080 Hb_002613_020--Hb_000016_080 Hb_007576_170 Hb_007576_170 Hb_002613_020--Hb_007576_170 Hb_033153_060 Hb_033153_060 Hb_002613_020--Hb_033153_060 Hb_000431_070--Hb_007576_170 Hb_000045_310 Hb_000045_310 Hb_000431_070--Hb_000045_310 Hb_001279_080 Hb_001279_080 Hb_000431_070--Hb_001279_080 Hb_002000_140 Hb_002000_140 Hb_000431_070--Hb_002000_140 Hb_000431_070--Hb_087749_010 Hb_002798_020 Hb_002798_020 Hb_007065_010--Hb_002798_020 Hb_000789_230 Hb_000789_230 Hb_007065_010--Hb_000789_230 Hb_000735_090 Hb_000735_090 Hb_007065_010--Hb_000735_090 Hb_007065_010--Hb_000016_080 Hb_001989_090 Hb_001989_090 Hb_007065_010--Hb_001989_090 Hb_087749_010--Hb_002798_020 Hb_087749_010--Hb_007065_010 Hb_003025_040 Hb_003025_040 Hb_087749_010--Hb_003025_040 Hb_087749_010--Hb_033153_060 Hb_000016_080--Hb_000789_230 Hb_000254_050 Hb_000254_050 Hb_000016_080--Hb_000254_050 Hb_000016_080--Hb_000735_090 Hb_001728_060 Hb_001728_060 Hb_000016_080--Hb_001728_060 Hb_004459_040 Hb_004459_040 Hb_007576_170--Hb_004459_040 Hb_007576_170--Hb_002798_020 Hb_007576_170--Hb_033153_060 Hb_006541_010 Hb_006541_010 Hb_007576_170--Hb_006541_010 Hb_017225_020 Hb_017225_020 Hb_007576_170--Hb_017225_020 Hb_033153_060--Hb_004459_040 Hb_033153_060--Hb_006541_010 Hb_000042_200 Hb_000042_200 Hb_033153_060--Hb_000042_200 Hb_033153_060--Hb_007065_010 Hb_033153_060--Hb_000789_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.34103 1.38746 6.02786 6.10289 3.7055 5.77247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.196 17.1471 6.58515 7.86379 7.83262

CAGE analysis