Hb_002615_030

Information

Type -
Description -
Location Contig2615: 40298-46990
Sequence    

Annotation

kegg
ID rcu:RCOM_0067240
description protein binding protein, putative
nr
ID XP_011024967.1
description PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
swissprot
ID P29836
description E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.2 (strain K22) GN=BICP0 PE=3 SV=1
trembl
ID B9SY31
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0067240 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27342: 40273-46995 , PASA_asmbl_27343: 43273-43459
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002615_030 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
2 Hb_000023_310 0.0754788555 - - PREDICTED: probable folate-biopterin transporter 2 [Populus euphratica]
3 Hb_005016_010 0.0844538676 - - AMP dependent CoA ligase, putative [Ricinus communis]
4 Hb_007590_090 0.0852576245 - - PREDICTED: O-glucosyltransferase rumi [Jatropha curcas]
5 Hb_000599_210 0.0871883376 - - serine/threonine-protein kinase, putative [Ricinus communis]
6 Hb_000110_060 0.0922371514 - - PREDICTED: uncharacterized protein LOC105636258 [Jatropha curcas]
7 Hb_000365_010 0.0935565661 - - hypothetical protein POPTR_0006s10920g [Populus trichocarpa]
8 Hb_005218_080 0.0949536552 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000012_110 0.0975577884 - - hypothetical protein CICLE_v10008613mg [Citrus clementina]
10 Hb_001817_100 0.0979104804 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
11 Hb_002217_100 0.0996307308 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase dihydrolipoamide dehydrogenase, putative [Ricinus communis]
12 Hb_001619_060 0.1028736003 - - PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Jatropha curcas]
13 Hb_000638_130 0.1031748296 - - PREDICTED: SAL1 phosphatase-like [Jatropha curcas]
14 Hb_001301_280 0.1055704682 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004007_110 0.1084127198 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
16 Hb_002486_080 0.1086772623 - - PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Jatropha curcas]
17 Hb_002193_060 0.1092813011 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
18 Hb_000510_170 0.1099431469 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
19 Hb_177215_030 0.1101150417 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Hevea brasiliensis]
20 Hb_180378_010 0.1108908531 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Populus euphratica]

Gene co-expression network

sample Hb_002615_030 Hb_002615_030 Hb_000023_310 Hb_000023_310 Hb_002615_030--Hb_000023_310 Hb_005016_010 Hb_005016_010 Hb_002615_030--Hb_005016_010 Hb_007590_090 Hb_007590_090 Hb_002615_030--Hb_007590_090 Hb_000599_210 Hb_000599_210 Hb_002615_030--Hb_000599_210 Hb_000110_060 Hb_000110_060 Hb_002615_030--Hb_000110_060 Hb_000365_010 Hb_000365_010 Hb_002615_030--Hb_000365_010 Hb_002007_320 Hb_002007_320 Hb_000023_310--Hb_002007_320 Hb_001817_100 Hb_001817_100 Hb_000023_310--Hb_001817_100 Hb_004158_020 Hb_004158_020 Hb_000023_310--Hb_004158_020 Hb_000023_310--Hb_007590_090 Hb_003371_070 Hb_003371_070 Hb_000023_310--Hb_003371_070 Hb_180378_010 Hb_180378_010 Hb_005016_010--Hb_180378_010 Hb_000258_050 Hb_000258_050 Hb_005016_010--Hb_000258_050 Hb_010390_010 Hb_010390_010 Hb_005016_010--Hb_010390_010 Hb_001951_060 Hb_001951_060 Hb_005016_010--Hb_001951_060 Hb_177215_030 Hb_177215_030 Hb_005016_010--Hb_177215_030 Hb_007590_090--Hb_001817_100 Hb_004007_110 Hb_004007_110 Hb_007590_090--Hb_004007_110 Hb_001998_200 Hb_001998_200 Hb_007590_090--Hb_001998_200 Hb_000012_110 Hb_000012_110 Hb_007590_090--Hb_000012_110 Hb_002217_100 Hb_002217_100 Hb_007590_090--Hb_002217_100 Hb_005218_080 Hb_005218_080 Hb_000599_210--Hb_005218_080 Hb_171718_010 Hb_171718_010 Hb_000599_210--Hb_171718_010 Hb_000599_210--Hb_000365_010 Hb_002811_150 Hb_002811_150 Hb_000599_210--Hb_002811_150 Hb_000622_290 Hb_000622_290 Hb_000599_210--Hb_000622_290 Hb_000110_060--Hb_003371_070 Hb_000849_120 Hb_000849_120 Hb_000110_060--Hb_000849_120 Hb_001619_060 Hb_001619_060 Hb_000110_060--Hb_001619_060 Hb_000181_460 Hb_000181_460 Hb_000110_060--Hb_000181_460 Hb_021943_090 Hb_021943_090 Hb_000110_060--Hb_021943_090 Hb_000909_080 Hb_000909_080 Hb_000365_010--Hb_000909_080 Hb_001301_280 Hb_001301_280 Hb_000365_010--Hb_001301_280 Hb_000358_020 Hb_000358_020 Hb_000365_010--Hb_000358_020 Hb_001141_240 Hb_001141_240 Hb_000365_010--Hb_001141_240 Hb_011224_050 Hb_011224_050 Hb_000365_010--Hb_011224_050 Hb_000365_010--Hb_001951_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.10013 15.2208 23.1645 38.9168 2.53151 5.09427
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.0182 20.2557 16.469 21.9458 32.2971

CAGE analysis