Hb_002615_070

Information

Type -
Description -
Location Contig2615: 76382-81054
Sequence    

Annotation

kegg
ID pop:POPTR_0009s07430g
description POPTRDRAFT_821363; hypothetical protein
nr
ID XP_012065898.1
description PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L4C2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22784 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27345: 76850-80973
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002615_070 0.0 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
2 Hb_000805_210 0.0608087584 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
3 Hb_007919_110 0.0872532758 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
4 Hb_000703_160 0.0877590172 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X2 [Jatropha curcas]
5 Hb_003449_100 0.0888922755 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
6 Hb_000958_080 0.0990987697 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005535_080 0.1078200798 - - hypothetical protein CICLE_v10012766mg [Citrus clementina]
8 Hb_004096_160 0.1085083595 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
9 Hb_164945_010 0.1089086262 - - PREDICTED: DNA primase small subunit [Jatropha curcas]
10 Hb_161568_010 0.1093158971 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
11 Hb_001191_080 0.1104457804 - - protein with unknown function [Ricinus communis]
12 Hb_009222_070 0.1121801864 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
13 Hb_007163_060 0.115181209 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
14 Hb_000890_030 0.1162511217 - - plastid CUL1 [Hevea brasiliensis]
15 Hb_000395_040 0.1167286384 - - PREDICTED: uncharacterized protein LOC105645576 [Jatropha curcas]
16 Hb_012760_030 0.1170661003 - - PREDICTED: probable prolyl 4-hydroxylase 10 [Gossypium raimondii]
17 Hb_000753_160 0.1176660021 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
18 Hb_003964_080 0.1193355204 - - PREDICTED: probable methyltransferase PMT5 [Jatropha curcas]
19 Hb_083628_010 0.1195813789 - - PREDICTED: probable serine protease EDA2 [Jatropha curcas]
20 Hb_005381_020 0.1201630102 - - PREDICTED: uncharacterized protein LOC105630417 [Jatropha curcas]

Gene co-expression network

sample Hb_002615_070 Hb_002615_070 Hb_000805_210 Hb_000805_210 Hb_002615_070--Hb_000805_210 Hb_007919_110 Hb_007919_110 Hb_002615_070--Hb_007919_110 Hb_000703_160 Hb_000703_160 Hb_002615_070--Hb_000703_160 Hb_003449_100 Hb_003449_100 Hb_002615_070--Hb_003449_100 Hb_000958_080 Hb_000958_080 Hb_002615_070--Hb_000958_080 Hb_005535_080 Hb_005535_080 Hb_002615_070--Hb_005535_080 Hb_000890_030 Hb_000890_030 Hb_000805_210--Hb_000890_030 Hb_001623_110 Hb_001623_110 Hb_000805_210--Hb_001623_110 Hb_012760_030 Hb_012760_030 Hb_000805_210--Hb_012760_030 Hb_000805_210--Hb_000958_080 Hb_083628_010 Hb_083628_010 Hb_000805_210--Hb_083628_010 Hb_007919_110--Hb_003449_100 Hb_000753_160 Hb_000753_160 Hb_007919_110--Hb_000753_160 Hb_002272_240 Hb_002272_240 Hb_007919_110--Hb_002272_240 Hb_007919_110--Hb_012760_030 Hb_003209_130 Hb_003209_130 Hb_007919_110--Hb_003209_130 Hb_006120_050 Hb_006120_050 Hb_007919_110--Hb_006120_050 Hb_000703_160--Hb_003449_100 Hb_074399_010 Hb_074399_010 Hb_000703_160--Hb_074399_010 Hb_000703_160--Hb_007919_110 Hb_005144_210 Hb_005144_210 Hb_000703_160--Hb_005144_210 Hb_161568_010 Hb_161568_010 Hb_000703_160--Hb_161568_010 Hb_000703_160--Hb_000958_080 Hb_002249_020 Hb_002249_020 Hb_003449_100--Hb_002249_020 Hb_002304_050 Hb_002304_050 Hb_003449_100--Hb_002304_050 Hb_003449_100--Hb_000753_160 Hb_003449_100--Hb_000958_080 Hb_004096_160 Hb_004096_160 Hb_000958_080--Hb_004096_160 Hb_009449_060 Hb_009449_060 Hb_000958_080--Hb_009449_060 Hb_005322_050 Hb_005322_050 Hb_000958_080--Hb_005322_050 Hb_000089_210 Hb_000089_210 Hb_000958_080--Hb_000089_210 Hb_002909_040 Hb_002909_040 Hb_000958_080--Hb_002909_040 Hb_005730_010 Hb_005730_010 Hb_000958_080--Hb_005730_010 Hb_005535_080--Hb_003209_130 Hb_005381_020 Hb_005381_020 Hb_005535_080--Hb_005381_020 Hb_002486_050 Hb_002486_050 Hb_005535_080--Hb_002486_050 Hb_000395_040 Hb_000395_040 Hb_005535_080--Hb_000395_040 Hb_000622_110 Hb_000622_110 Hb_005535_080--Hb_000622_110 Hb_005535_080--Hb_007919_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.2778 7.95699 14.0061 14.7991 4.73537 4.86327
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.58355 4.02478 3.72593 3.40079 3.46633

CAGE analysis