Hb_002615_090

Information

Type -
Description -
Location Contig2615: 88716-96240
Sequence    

Annotation

kegg
ID rcu:RCOM_1478200
description smg-7, putative
nr
ID XP_012065894.1
description PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
swissprot
ID A9QM73
description Protein SMG7 OS=Arabidopsis thaliana GN=SMG7 PE=2 SV=1
trembl
ID A0A067LFH6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22782 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein smg7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27352: 88838-96052
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002615_090 0.0 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
2 Hb_000960_100 0.0483848108 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
3 Hb_003785_040 0.0525280043 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
4 Hb_002235_300 0.0538722945 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X1 [Jatropha curcas]
5 Hb_002253_080 0.0561426647 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
6 Hb_000878_180 0.0562083325 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
7 Hb_001767_140 0.0600981284 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
8 Hb_000479_220 0.0623380729 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
9 Hb_008253_030 0.0627993876 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
10 Hb_000680_090 0.0638429802 - - Protein SEY1, putative [Ricinus communis]
11 Hb_002174_020 0.0640302073 - - ring finger protein, putative [Ricinus communis]
12 Hb_008112_030 0.0643247096 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006252_020 0.0646612497 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
14 Hb_009615_170 0.0655914832 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
15 Hb_000563_640 0.0660201483 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
16 Hb_000025_320 0.0662642406 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
17 Hb_007635_030 0.0668335804 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
18 Hb_009112_010 0.0674746017 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
19 Hb_004128_050 0.0681562987 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
20 Hb_000162_280 0.0692731266 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]

Gene co-expression network

sample Hb_002615_090 Hb_002615_090 Hb_000960_100 Hb_000960_100 Hb_002615_090--Hb_000960_100 Hb_003785_040 Hb_003785_040 Hb_002615_090--Hb_003785_040 Hb_002235_300 Hb_002235_300 Hb_002615_090--Hb_002235_300 Hb_002253_080 Hb_002253_080 Hb_002615_090--Hb_002253_080 Hb_000878_180 Hb_000878_180 Hb_002615_090--Hb_000878_180 Hb_001767_140 Hb_001767_140 Hb_002615_090--Hb_001767_140 Hb_004108_100 Hb_004108_100 Hb_000960_100--Hb_004108_100 Hb_002022_070 Hb_002022_070 Hb_000960_100--Hb_002022_070 Hb_000025_320 Hb_000025_320 Hb_000960_100--Hb_000025_320 Hb_000960_100--Hb_002235_300 Hb_001235_230 Hb_001235_230 Hb_000960_100--Hb_001235_230 Hb_031527_020 Hb_031527_020 Hb_003785_040--Hb_031527_020 Hb_004128_050 Hb_004128_050 Hb_003785_040--Hb_004128_050 Hb_009503_030 Hb_009503_030 Hb_003785_040--Hb_009503_030 Hb_000395_130 Hb_000395_130 Hb_003785_040--Hb_000395_130 Hb_000092_020 Hb_000092_020 Hb_003785_040--Hb_000092_020 Hb_000977_120 Hb_000977_120 Hb_002235_300--Hb_000977_120 Hb_000684_250 Hb_000684_250 Hb_002235_300--Hb_000684_250 Hb_002235_300--Hb_002253_080 Hb_002235_300--Hb_000025_320 Hb_002267_140 Hb_002267_140 Hb_002235_300--Hb_002267_140 Hb_001322_130 Hb_001322_130 Hb_002253_080--Hb_001322_130 Hb_008253_030 Hb_008253_030 Hb_002253_080--Hb_008253_030 Hb_002253_080--Hb_001767_140 Hb_031042_050 Hb_031042_050 Hb_002253_080--Hb_031042_050 Hb_002253_080--Hb_002267_140 Hb_002025_060 Hb_002025_060 Hb_000878_180--Hb_002025_060 Hb_000680_090 Hb_000680_090 Hb_000878_180--Hb_000680_090 Hb_000878_180--Hb_002235_300 Hb_009615_170 Hb_009615_170 Hb_000878_180--Hb_009615_170 Hb_000084_250 Hb_000084_250 Hb_000878_180--Hb_000084_250 Hb_001767_140--Hb_008253_030 Hb_001767_140--Hb_002267_140 Hb_140049_040 Hb_140049_040 Hb_001767_140--Hb_140049_040 Hb_000174_060 Hb_000174_060 Hb_001767_140--Hb_000174_060 Hb_003866_080 Hb_003866_080 Hb_001767_140--Hb_003866_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.2182 56.3948 25.7376 28.4324 47.6337 49.5139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.7209 21.3091 33.2389 28.1236 28.6567

CAGE analysis