Hb_002615_100

Information

Type -
Description -
Location Contig2615: 98167-105655
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002615_100 0.0 - - -
2 Hb_002240_080 0.1498694592 - - -
3 Hb_175450_010 0.2117126578 - - -
4 Hb_002228_090 0.2346193597 - - hypothetical protein POPTR_0006s23560g [Populus trichocarpa]
5 Hb_081207_010 0.2393589375 - - hypothetical protein JCGZ_17195 [Jatropha curcas]
6 Hb_006588_010 0.2405459351 - - -
7 Hb_002259_050 0.2422514038 - - unnamed protein product [Vitis vinifera]
8 Hb_006922_040 0.2706177986 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
9 Hb_002431_060 0.2810276932 - - -
10 Hb_035905_010 0.2849209761 - - PREDICTED: uncharacterized protein LOC105627956 [Jatropha curcas]
11 Hb_000445_220 0.2935919156 - - -
12 Hb_004584_010 0.3034373396 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
13 Hb_003992_120 0.3107524617 - - hypothetical protein MTR_6g089560 [Medicago truncatula]
14 Hb_001799_040 0.3210600294 - - -
15 Hb_009954_050 0.3247683815 - - PREDICTED: uncharacterized protein LOC104611877 isoform X2 [Nelumbo nucifera]
16 Hb_002918_300 0.3249790664 - - -
17 Hb_153216_010 0.3252675639 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
18 Hb_004691_040 0.3267301396 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
19 Hb_000373_300 0.3270052243 - - hypothetical protein F775_20382 [Aegilops tauschii]
20 Hb_170207_010 0.3294771291 - - hypothetical protein JCGZ_01992 [Jatropha curcas]

Gene co-expression network

sample Hb_002615_100 Hb_002615_100 Hb_002240_080 Hb_002240_080 Hb_002615_100--Hb_002240_080 Hb_175450_010 Hb_175450_010 Hb_002615_100--Hb_175450_010 Hb_002228_090 Hb_002228_090 Hb_002615_100--Hb_002228_090 Hb_081207_010 Hb_081207_010 Hb_002615_100--Hb_081207_010 Hb_006588_010 Hb_006588_010 Hb_002615_100--Hb_006588_010 Hb_002259_050 Hb_002259_050 Hb_002615_100--Hb_002259_050 Hb_082730_010 Hb_082730_010 Hb_002240_080--Hb_082730_010 Hb_002240_080--Hb_006588_010 Hb_006922_040 Hb_006922_040 Hb_002240_080--Hb_006922_040 Hb_002240_080--Hb_002259_050 Hb_035905_010 Hb_035905_010 Hb_002240_080--Hb_035905_010 Hb_175450_010--Hb_002259_050 Hb_175450_010--Hb_002228_090 Hb_175450_010--Hb_081207_010 Hb_002431_060 Hb_002431_060 Hb_175450_010--Hb_002431_060 Hb_000445_220 Hb_000445_220 Hb_175450_010--Hb_000445_220 Hb_002228_090--Hb_081207_010 Hb_000184_190 Hb_000184_190 Hb_002228_090--Hb_000184_190 Hb_002228_090--Hb_000445_220 Hb_002228_090--Hb_006922_040 Hb_002228_090--Hb_002259_050 Hb_081207_010--Hb_000445_220 Hb_081207_010--Hb_002259_050 Hb_081207_010--Hb_006922_040 Hb_081207_010--Hb_002431_060 Hb_012163_030 Hb_012163_030 Hb_006588_010--Hb_012163_030 Hb_001427_140 Hb_001427_140 Hb_006588_010--Hb_001427_140 Hb_006588_010--Hb_006922_040 Hb_006588_010--Hb_002228_090 Hb_001186_080 Hb_001186_080 Hb_006588_010--Hb_001186_080 Hb_002259_050--Hb_000445_220 Hb_002259_050--Hb_006922_040 Hb_002259_050--Hb_002431_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0261433 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0297669 0.0468378 0 0.00934267 0

CAGE analysis