Hb_002616_020

Information

Type -
Description -
Location Contig2616: 44244-45438
Sequence    

Annotation

kegg
ID rcu:RCOM_1552200
description Peroxidase 3 precursor, putative (EC:1.11.1.7)
nr
ID XP_012086366.1
description PREDICTED: peroxidase 3 [Jatropha curcas]
swissprot
ID O23044
description Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=2 SV=1
trembl
ID A0A067K0S6
description Peroxidase OS=Jatropha curcas GN=JCGZ_22885 PE=3 SV=1
Gene Ontology
ID GO:0005576
description peroxidase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27361: 44291-45561
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002616_020 0.0 - - PREDICTED: peroxidase 3 [Jatropha curcas]
2 Hb_000352_360 0.0544035524 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
3 Hb_002869_090 0.0580304703 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
4 Hb_027400_020 0.0636442036 - - PREDICTED: uncharacterized protein At5g22580 isoform X2 [Jatropha curcas]
5 Hb_000076_280 0.0722649759 - - PREDICTED: pectinesterase-like [Populus euphratica]
6 Hb_000419_140 0.0842641286 - - Aquaporin PIP2.1, putative [Ricinus communis]
7 Hb_003849_170 0.0847265143 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
8 Hb_000659_050 0.0855503558 - - PREDICTED: basic blue protein-like [Jatropha curcas]
9 Hb_001257_140 0.0936976012 - - Gb:AAF02129.1, putative [Theobroma cacao]
10 Hb_000834_130 0.0985986066 - - conserved hypothetical protein [Ricinus communis]
11 Hb_170077_020 0.0986025238 - - PREDICTED: probable serine incorporator [Jatropha curcas]
12 Hb_027405_010 0.1025105321 - - PREDICTED: uncharacterized protein At3g17950-like [Populus euphratica]
13 Hb_001769_070 0.1037176655 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
14 Hb_000344_030 0.104463403 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
15 Hb_000327_100 0.1046006882 - - hypothetical protein JCGZ_06658 [Jatropha curcas]
16 Hb_003607_090 0.1061107158 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
17 Hb_000334_090 0.113844407 - - hypothetical protein JCGZ_16789 [Jatropha curcas]
18 Hb_000561_040 0.1145783795 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
19 Hb_002768_040 0.1172872185 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000163_170 0.1175615694 - - -

Gene co-expression network

sample Hb_002616_020 Hb_002616_020 Hb_000352_360 Hb_000352_360 Hb_002616_020--Hb_000352_360 Hb_002869_090 Hb_002869_090 Hb_002616_020--Hb_002869_090 Hb_027400_020 Hb_027400_020 Hb_002616_020--Hb_027400_020 Hb_000076_280 Hb_000076_280 Hb_002616_020--Hb_000076_280 Hb_000419_140 Hb_000419_140 Hb_002616_020--Hb_000419_140 Hb_003849_170 Hb_003849_170 Hb_002616_020--Hb_003849_170 Hb_001257_140 Hb_001257_140 Hb_000352_360--Hb_001257_140 Hb_000352_360--Hb_002869_090 Hb_170077_020 Hb_170077_020 Hb_000352_360--Hb_170077_020 Hb_000352_360--Hb_003849_170 Hb_000327_100 Hb_000327_100 Hb_000352_360--Hb_000327_100 Hb_000659_050 Hb_000659_050 Hb_002869_090--Hb_000659_050 Hb_002869_090--Hb_000327_100 Hb_002869_090--Hb_027400_020 Hb_000561_040 Hb_000561_040 Hb_002869_090--Hb_000561_040 Hb_027400_020--Hb_000076_280 Hb_027400_020--Hb_000419_140 Hb_001769_070 Hb_001769_070 Hb_027400_020--Hb_001769_070 Hb_000329_010 Hb_000329_010 Hb_027400_020--Hb_000329_010 Hb_000076_280--Hb_001769_070 Hb_000076_280--Hb_000419_140 Hb_000076_280--Hb_000329_010 Hb_002809_080 Hb_002809_080 Hb_000076_280--Hb_002809_080 Hb_001777_010 Hb_001777_010 Hb_000419_140--Hb_001777_010 Hb_000419_140--Hb_001769_070 Hb_000419_140--Hb_000329_010 Hb_003849_170--Hb_001257_140 Hb_003849_170--Hb_170077_020 Hb_005648_020 Hb_005648_020 Hb_003849_170--Hb_005648_020 Hb_005144_150 Hb_005144_150 Hb_003849_170--Hb_005144_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.180732 4.16571 9.0394 55.9449 0.122378 0.0606935
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 10.215 8.6349

CAGE analysis