Hb_002616_050

Information

Type -
Description -
Location Contig2616: 104888-115171
Sequence    

Annotation

kegg
ID pop:POPTR_0007s02600g
description POPTRDRAFT_868168; hypothetical protein
nr
ID XP_012086377.1
description PREDICTED: traB domain-containing protein [Jatropha curcas]
swissprot
ID Q58DF3
description TraB domain-containing protein OS=Bos taurus GN=TRABD PE=2 SV=1
trembl
ID A0A067JSS9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22893 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27362: 104939-114980 , PASA_asmbl_27363: 108579-108803 , PASA_asmbl_27365: 104939-114980 , PASA_asmbl_27366: 115016-115149
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002616_050 0.0 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
2 Hb_000363_500 0.0553027723 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
3 Hb_000023_140 0.0590926811 - - PREDICTED: cadmium-induced protein AS8 isoform X1 [Jatropha curcas]
4 Hb_004072_020 0.0662425825 - - PREDICTED: uncharacterized protein LOC105635274 [Jatropha curcas]
5 Hb_005063_040 0.0705630117 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Jatropha curcas]
6 Hb_003001_120 0.0736102488 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
7 Hb_000889_020 0.075004452 - - ribosome biogenesis protein brix, putative [Ricinus communis]
8 Hb_003005_020 0.0760717185 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
9 Hb_000529_190 0.0769840464 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
10 Hb_071736_010 0.078217911 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
11 Hb_004055_140 0.0794566696 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
12 Hb_007441_120 0.0827490795 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
13 Hb_004128_190 0.0835983658 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
14 Hb_000373_240 0.0855904819 - - PREDICTED: uncharacterized protein LOC105640940 isoform X1 [Jatropha curcas]
15 Hb_002391_300 0.0856020447 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
16 Hb_000045_090 0.0858150508 - - PREDICTED: syntaxin-31 [Jatropha curcas]
17 Hb_006692_030 0.0858790125 - - PREDICTED: uncharacterized protein LOC105632913 [Jatropha curcas]
18 Hb_003929_160 0.0873023585 - - PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Jatropha curcas]
19 Hb_002112_040 0.0874351518 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
20 Hb_007380_070 0.0876305031 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002616_050 Hb_002616_050 Hb_000363_500 Hb_000363_500 Hb_002616_050--Hb_000363_500 Hb_000023_140 Hb_000023_140 Hb_002616_050--Hb_000023_140 Hb_004072_020 Hb_004072_020 Hb_002616_050--Hb_004072_020 Hb_005063_040 Hb_005063_040 Hb_002616_050--Hb_005063_040 Hb_003001_120 Hb_003001_120 Hb_002616_050--Hb_003001_120 Hb_000889_020 Hb_000889_020 Hb_002616_050--Hb_000889_020 Hb_003847_080 Hb_003847_080 Hb_000363_500--Hb_003847_080 Hb_002078_150 Hb_002078_150 Hb_000363_500--Hb_002078_150 Hb_004128_190 Hb_004128_190 Hb_000363_500--Hb_004128_190 Hb_000465_430 Hb_000465_430 Hb_000363_500--Hb_000465_430 Hb_000363_500--Hb_005063_040 Hb_005754_060 Hb_005754_060 Hb_000023_140--Hb_005754_060 Hb_071736_010 Hb_071736_010 Hb_000023_140--Hb_071736_010 Hb_001855_010 Hb_001855_010 Hb_000023_140--Hb_001855_010 Hb_000023_140--Hb_005063_040 Hb_006788_070 Hb_006788_070 Hb_000023_140--Hb_006788_070 Hb_024714_100 Hb_024714_100 Hb_004072_020--Hb_024714_100 Hb_001998_230 Hb_001998_230 Hb_004072_020--Hb_001998_230 Hb_004072_020--Hb_000363_500 Hb_002112_040 Hb_002112_040 Hb_004072_020--Hb_002112_040 Hb_005862_010 Hb_005862_010 Hb_004072_020--Hb_005862_010 Hb_076787_010 Hb_076787_010 Hb_005063_040--Hb_076787_010 Hb_007101_100 Hb_007101_100 Hb_005063_040--Hb_007101_100 Hb_028872_140 Hb_028872_140 Hb_005063_040--Hb_028872_140 Hb_003005_020 Hb_003005_020 Hb_005063_040--Hb_003005_020 Hb_001030_120 Hb_001030_120 Hb_005063_040--Hb_001030_120 Hb_003929_160 Hb_003929_160 Hb_003001_120--Hb_003929_160 Hb_011689_080 Hb_011689_080 Hb_003001_120--Hb_011689_080 Hb_001936_080 Hb_001936_080 Hb_003001_120--Hb_001936_080 Hb_001269_680 Hb_001269_680 Hb_003001_120--Hb_001269_680 Hb_118707_030 Hb_118707_030 Hb_003001_120--Hb_118707_030 Hb_000230_200 Hb_000230_200 Hb_003001_120--Hb_000230_200 Hb_000373_240 Hb_000373_240 Hb_000889_020--Hb_000373_240 Hb_000166_110 Hb_000166_110 Hb_000889_020--Hb_000166_110 Hb_007218_080 Hb_007218_080 Hb_000889_020--Hb_007218_080 Hb_011794_060 Hb_011794_060 Hb_000889_020--Hb_011794_060 Hb_000179_020 Hb_000179_020 Hb_000889_020--Hb_000179_020 Hb_006692_030 Hb_006692_030 Hb_000889_020--Hb_006692_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.3701 6.66038 11.1678 14.0409 23.9197 45.4072
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.8815 27.0286 25.1953 13.2503 11.9883

CAGE analysis