Hb_002621_020

Information

Type -
Description -
Location Contig2621: 27724-29181
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002621_020 0.0 - - -
2 Hb_000703_310 0.0033926383 - - -
3 Hb_007441_030 0.0062095816 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
4 Hb_010139_010 0.0069911509 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
5 Hb_005656_090 0.0079747545 transcription factor TF Family: NAC hypothetical protein CICLE_v10008885mg [Citrus clementina]
6 Hb_000163_310 0.0114347447 - - PREDICTED: ABC transporter C family member 4-like [Malus domestica]
7 Hb_006364_010 0.0206973533 - - -
8 Hb_005228_090 0.0213421614 - - PREDICTED: magnesium transporter MRS2-3-like [Citrus sinensis]
9 Hb_004918_040 0.0221840962 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004693_030 0.0240442507 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
11 Hb_003735_010 0.0243122538 - - -
12 Hb_008397_020 0.0244505344 - - polyprotein [Oryza australiensis]
13 Hb_001719_030 0.0251615074 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_083377_010 0.0258159798 - - unnamed protein product [Vitis vinifera]
15 Hb_072368_010 0.0266824408 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
16 Hb_008159_030 0.0363408806 - - hypothetical protein B456_004G088300 [Gossypium raimondii]
17 Hb_000107_460 0.0489479014 - - PREDICTED: uncharacterized protein LOC104585930 [Nelumbo nucifera]
18 Hb_007658_020 0.0499931963 - - Beta-amyrin synthase [Glycine soja]
19 Hb_000000_220 0.050321135 - - protein with unknown function [Ricinus communis]
20 Hb_007382_060 0.0539009804 - - -

Gene co-expression network

sample Hb_002621_020 Hb_002621_020 Hb_000703_310 Hb_000703_310 Hb_002621_020--Hb_000703_310 Hb_007441_030 Hb_007441_030 Hb_002621_020--Hb_007441_030 Hb_010139_010 Hb_010139_010 Hb_002621_020--Hb_010139_010 Hb_005656_090 Hb_005656_090 Hb_002621_020--Hb_005656_090 Hb_000163_310 Hb_000163_310 Hb_002621_020--Hb_000163_310 Hb_006364_010 Hb_006364_010 Hb_002621_020--Hb_006364_010 Hb_000703_310--Hb_007441_030 Hb_000703_310--Hb_000163_310 Hb_000703_310--Hb_010139_010 Hb_000703_310--Hb_005656_090 Hb_000703_310--Hb_006364_010 Hb_007441_030--Hb_000163_310 Hb_007441_030--Hb_010139_010 Hb_007441_030--Hb_005656_090 Hb_007441_030--Hb_006364_010 Hb_010139_010--Hb_005656_090 Hb_004918_040 Hb_004918_040 Hb_010139_010--Hb_004918_040 Hb_003735_010 Hb_003735_010 Hb_010139_010--Hb_003735_010 Hb_005656_090--Hb_004918_040 Hb_005656_090--Hb_003735_010 Hb_000163_310--Hb_006364_010 Hb_005228_090 Hb_005228_090 Hb_000163_310--Hb_005228_090 Hb_004693_030 Hb_004693_030 Hb_000163_310--Hb_004693_030 Hb_006364_010--Hb_005228_090 Hb_006364_010--Hb_004693_030 Hb_072368_010 Hb_072368_010 Hb_006364_010--Hb_072368_010 Hb_008159_030 Hb_008159_030 Hb_006364_010--Hb_008159_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.121594 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.236588 0

CAGE analysis